Sphaerotilus sulfidivorans: EWH46_14355
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Entry
EWH46_14355 CDS
T06182
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
snn
Sphaerotilus sulfidivorans
Pathway
snn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EWH46_14355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snn03019
]
EWH46_14355
03009 Ribosome biogenesis [BR:
snn03009
]
EWH46_14355
Enzymes [BR:
snn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EWH46_14355
Messenger RNA biogenesis [BR:
snn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EWH46_14355
Ribosome biogenesis [BR:
snn03009
]
Prokaryotic type
rRNA processing factors
EWH46_14355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QEN01838
UniProt:
A0A5C1Q317
LinkDB
All DBs
Position
complement(3168825..3171692)
Genome browser
AA seq
955 aa
AA seq
DB search
MKRMLINATQPEERRLAIVDGQKLIDFETEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISRQYFRDGVEVRSARIQDVIKEGQELLVQVEKEERGNKGAALTTFVS
LAGRYLVLMPNNPRGGGVSRRIEGEDREELKENLEQLEYPKGMSLIARTAGIGRTAPELQ
WDLNYMLKLWSAIDDAAKGGKGAFLIYQESSLVIRAIRDYFTADIGEILIDTDDIYEQAR
QFMLHVMPETANRVKRYRDDAPLFSRFQIEHQIETAFSRTVHLPSGGAIVIDHTEALVSI
DVNSARATRGGDIEETATRTNLEAADEIARQARLRDLGGLLVVDFIDMEESKNRREVEQR
LRDALRHDRARVQFSSISKFGLLEMSRQRLRPALSEGSHITCPRCNGTGHIRDTESSALQ
TLRIIQEESMKEGTAAVHVQVPVEVASFLLNEKRTEITKIELKQRVTVLLVPNKHLDTPN
YKLERLRHDDARLENLKASYSMIEEPPEDVGLPRREKQQAKAKQEPVIKGVLPDQPAPVA
APKPEPVAAAPVAAAPAPVAAPVPAPAPVAPAPAPATGFFGWMKRLFGIAPAPAPVQAAV
QPVASAAQSVDADPAVAQPAAAPAGELRGERGERGDRRGGRNGERRGGRNGERGERGERA
ERGERGEQRGDRPPRGERGERGERPQRERRPAPEVAVPADEAALQAPAFADTQPQAFDGE
DASAERDGRRRRRGGRNRRDRDERGAEGVVTEDGQAVEVVPTEVSEPAEPAPVAADEVRE
DGAAREEGRRRRRRGGRRDEAAGEGAPDGVSEGQDAEPAAVAALAPVEQAVEPVVAAAAV
AAVAEPVLQAVAEPTAEPVAEPVAEPVAVAQPYVLQIEALAEVAREAGLEWINSDPDKVR
AVQEAIAAEPKPVHVPREPRPVVLVDEGPLILVETRRDLASLQLPFEVEAQAARG
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
gtgaaacgcatgctgatcaacgccacgcagccggaagagcggcgcctggcgatcgttgat
ggccagaagctgatcgacttcgagaccgagatcgaagggcgcgagcagcgcaagggcaac
atctacaaggccgtcgtcacccgtgtcgagccctcgctggaggcctgcttcgtcgactac
ggcgaagaccgacacggcttcctgccgttcaaggaaatctcgcgccagtacttcagggac
ggcgtcgaggtccgctcggcgcgcatccaggacgtgatcaaggaagggcaggaactgctc
gtccaggtcgagaaggaagagcgcggcaacaagggcgcggcgctgaccaccttcgtgagc
ctggccggccgctatctggtgctgatgcccaacaacccgcgcggcggcggcgtcagccgc
cgcatcgagggcgaggaccgcgaggagctgaaggagaacctcgagcagctcgagtacccg
aagggcatgtcgctcatcgcccgcaccgccggcatcggccgcaccgcgcccgagctgcag
tgggacctgaactacatgctcaagctgtggtcggcgatcgacgacgcggccaagggcggc
aagggcgccttcctgatctatcaggagtcgtcgctggtgatccgcgccatccgcgactac
ttcaccgccgacatcggcgagatcctgatcgacaccgacgacatctacgagcaggcgcgg
cagttcatgctgcacgtcatgcccgagacggccaaccgcgtgaagcgctaccgcgacgac
gcgccgctgttcagccgcttccagatcgagcaccagatcgagacggccttcagccgcacg
gtgcatctgccctcgggcggtgcgatcgtgatcgaccacaccgaagcgctggtgtcgatc
gacgtcaactcggcgcgtgccacccgtggcggcgacatcgaggagaccgcgacccgcacc
aacctcgaagccgccgacgagatcgcccgccaggcgcgcctgcgcgacctgggcggcctg
ctggtggtcgacttcatcgacatggaggagtcgaagaaccgccgcgaggtcgagcagcgc
ctgcgcgatgcgctgcgccatgaccgcgcccgcgtgcagttctcgtcgatctcgaagttc
ggcctgctggagatgagccgccagcgcctgcgcccggcgctgagcgagggcagccacatc
acctgcccgcgctgcaacggcaccggccacatccgcgacaccgagtcctccgcgctgcag
acgctgcgcatcatccaggaggagtcgatgaaggagggcacggccgccgtccacgtccag
gtgccggtcgaggtcgccagcttcctgctcaacgagaagcgcaccgagatcaccaagatc
gagctcaagcagcgcgtcaccgtgctgctggtgcccaacaagcacctcgacacgccgaac
tacaagctcgagcgcctgcgccatgacgatgcgcgcctggagaacctgaaggccagctac
tcgatgatcgaggagccgcccgaggacgtcggcctgccccgccgcgagaagcagcaggcc
aaggccaagcaggagccggtgatcaagggcgtgctgcccgaccagcccgcgccggtcgcc
gcgccgaagcccgagccggtcgcggcggccccggtcgccgccgcaccggctccggtggcg
gcgcctgtgccggccccggctccggtggccccggcgcctgcgccggccaccggcttcttc
ggctggatgaagcgcctgttcggcatcgcgccggcgcccgcgccggtgcaggccgcggtt
cagccggtggcctcggccgctcagtcggtcgacgccgacccggcggtcgcccagcccgca
gcggccccggccggcgagctgcgcggtgagcgtggcgagcgcggcgatcgtcgcggcggc
cgcaacggcgagcgccgtggtggacgcaacggcgagcgcggcgaacgtggagagcgcgcc
gagcgtggcgagcgcggcgaacagcgcggcgaccgtccgccgcgtggcgaacggggcgag
cgcggtgagcgtccgcagcgcgagcgtcgcccggcccccgaggtcgcggtgccggccgac
gaagccgcgctgcaggcgccggcctttgccgacacccagcctcaggccttcgatggtgag
gatgccagcgccgagcgtgatggccgccgccgccgccgtggcggtcgcaaccgccgtgat
cgtgacgagcgcggtgccgagggcgtggtgaccgaggacggccaggccgtcgaggtcgtg
ccgaccgaggtgtccgagccggccgagcccgcaccggtggccgccgacgaggtccgcgag
gacggcgccgcccgcgaggaaggccgccgtcgccgccgccgtggcggtcgccgcgacgag
gcggctggcgagggcgcgcccgacggcgtgtccgaaggccaggacgccgagccggcggcc
gtggccgcgctggctccggtcgagcaggctgtcgagccggtggtcgctgccgctgccgtg
gcggcggtcgccgaaccggtgctgcaggccgtggccgagccgaccgccgagccggttgcc
gagcctgtcgccgagcccgtggcggtcgcgcagccctatgtgctgcagatcgaggcgctg
gccgaagtggcccgcgaggccggtctggagtggatcaactccgacccggacaaggtccgc
gcggtccaggaggccatcgccgccgagcccaagccggtccatgtgccgcgcgagccgcgt
ccggtggtgctggtcgacgagggtccgctgatcctggtcgagacccgccgcgatctggcc
tcgctgcagctgcctttcgaggtcgaggcccaggcggcgcgcggctga
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