Ancylobacter novellus: Snov_1332
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Entry
Snov_1332 CDS
T01258
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sno
Ancylobacter novellus
Pathway
sno03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sno00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Snov_1332
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sno03019
]
Snov_1332
03009 Ribosome biogenesis [BR:
sno03009
]
Snov_1332
Enzymes [BR:
sno01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Snov_1332
Messenger RNA biogenesis [BR:
sno03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Snov_1332
Ribosome biogenesis [BR:
sno03009
]
Prokaryotic type
rRNA processing factors
Snov_1332
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Ogr_Delta
Motif
Other DBs
NCBI-ProteinID:
ADH88642
UniProt:
D7A8G9
LinkDB
All DBs
Position
complement(1384299..1387046)
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AA seq
915 aa
AA seq
DB search
MANKMLIDATHPEETRVVVVRGNRVEEFDFEAANRKPLRGNIYLAKVTRVEPSLQAAFIE
YGGNRHGFLAFSEIHPDYYQIPVADRQALLAEEERQQRREAEAENEDKPKSRSRRGRGAA
KSANADETVSEEAAGEDAPAAEEAEAAPARRSRRRPPSSSSSDDENGGGEVEEIAGEEEV
VDEVGSDDALEEVPERGAPRVRARQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSL
AGRYSVLMPNTARGGGISRKITSAEDRKRLKEVASDLDVPEGMGVILRTAGANRTKPEIK
RDFEYLLRLWENVRELTLGSTAPSLVYEEGSLIKRSIRDLYNKDIDEVLVAGDEGYREAK
DFMRMLMPSHAKNVKVYKDLQPIFTRFGVESQLDAMFLPQVQLRSGGYLVINPTEALVSI
DVNSGRSTREHNIEDTALKTNLEAAEEVARQLRLRDLAGLVVIDFIDMDEKRNNRSVERK
LKDCLKNDRARIQLGRISHFGLMEMSRQRIRTGVLESSTEVCPHCGGTGHVRSSPSVALQ
LLRAAEDLLQRSNTHNLIVRTRTENALYVLNHKRAHLHELEERFGVVITISADPTLTGLT
PFAIDKGEAVANPIPLPRAPEVVIEPEEEFPVAEEVEEEEAEVAETRAPSAPSDGEQPQG
DRSGRRRRRRRRRRGGGQNGENGHRPGENEAADAAGIEFEDDGEDEGGEAESGATDVIPA
VPLSDEDASLVAPPAEDMAARFAASEGEPAAEAPAEAPATETPAEADAEETKPRRGRRGG
RRTRKASEAGEEAVTAEAAPAEPAAEVAPAVSTVREPAPVAPAPEPAAEHVAEAKPRRRR
STVREPAPVVTTETSAAVAPEVPAAAPEASAPEEAAPEAPAPEPAAAEPAPAAPAAAESD
RPRRTGWWQRKIFGE
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaagatgctcatcgacgccacccatccggaggagacccgggtggtggtggtg
cgcggcaaccgagtcgaggaattcgacttcgaagccgccaaccgcaagccgctgcgcggc
aacatctacctcgccaaggtcacgcgggtagagccctcccttcaggccgccttcatcgag
tatggcggcaaccggcatggcttcctcgccttcagcgagatccatcccgactactaccag
atccccgtcgccgaccggcaggcgctgcttgccgaggaggagcgccagcagcgccgcgag
gccgaggcggagaacgaggacaagccgaagagccgctcccgccgcggccgcggtgcggcg
aagagcgcgaacgccgacgagacggtctccgaggaggccgccggcgaggacgcgcccgct
gccgaggaagccgaggccgccccggcgcgccgctcgcgccgccgtcccccttcttcctcc
tcctccgacgacgagaacggcggcggcgaggtcgaggagatcgccggcgaggaagaggtg
gtcgacgaggtcggctccgacgacgcgctggaagaggttcccgagcgcggggcgccgcgc
gtgcgcgcccgccagtacaagatccaggaagtgatcaagcgccggcaggtgatgctggtg
caggtcgtgaaggaggagcgcggcaacaagggcgcggcgctcaccacctatctctcgctc
gccggccgctattcggtgctgatgccgaacaccgcgcgcggcggcggcatctcccgcaag
atcacctcggccgaggaccgcaagcggctgaaggaggtcgcctccgacctcgacgtgccg
gaggggatgggcgtcatcctgcgcaccgccggcgccaaccgcaccaagccggagatcaag
cgcgacttcgaatatcttctgcgcctgtgggagaatgtgcgcgagctcacgctgggctcg
accgcgccttcgctggtctatgaggaaggctcgctgatcaagcgctccatccgcgacctc
tacaacaaggacatcgacgaggtcctggtcgccggcgacgaaggctaccgcgaggccaag
gacttcatgcgcatgctcatgccgagccatgcgaagaacgtgaaggtctacaaggacctc
cagccgatcttcacccgcttcggggtggagagccagctcgacgcgatgttcctgccgcag
gtgcagctcaggtccggcggctatctcgtgatcaacccgaccgaggcgctggtctccatc
gacgtgaactcgggccgctcgacgcgcgagcacaatatcgaggacacggcgctcaagacc
aacctcgaagccgccgaggaagtcgcccgccagctgcgcctgcgcgacctcgccggcctc
gtcgtgatcgatttcatcgacatggacgagaagcgcaacaaccgatcggtcgagcgcaag
ctgaaggattgtctgaagaacgaccgcgcgcgcatccagctcggccgcatctcgcatttc
ggcctgatggagatgagccgccaacgcatccgcaccggcgtgctggaatcctccaccgag
gtctgcccgcactgcggcggcaccggccatgtgcgctcctcgccgtcggtcgcgctgcag
ctgctgcgggccgccgaggacctgctgcagcgttccaacacgcataatctcatcgtgcgc
acgcgcaccgagaacgcgctctacgtgctcaaccacaagcgtgcgcatctgcacgagctg
gaggagcgcttcggcgtcgtcatcaccatcagcgccgacccgacgctgaccggcctcacc
cccttcgccatcgataagggcgaggcggtggccaatcccatccccctgccccgcgcgccc
gaagtggtgatcgagccggaggaggagttcccggtcgccgaggaggtcgaggaagaggaa
gccgaggtcgccgagacccgcgccccgtccgcgccgtccgatggcgagcaaccgcagggc
gaccgctcgggtcgccgccggcgccgccggcgtcgtcggcgcggcggcggccagaatggc
gagaacggtcatcgcccgggcgagaacgaagcggcggacgccgccggcatcgagttcgag
gatgatggcgaggatgagggcggcgaggccgaaagcggcgcgaccgacgtgatccccgcc
gtgccgctgtccgacgaggacgcgtcgctggtggcgccgccggccgaggacatggccgct
cgtttcgccgcgagcgaaggcgagccggcagccgaagcgccggccgaggcgcccgctacc
gaaacgccggccgaggcggacgccgaggagaccaagccgcgccgcggacgtcgcggcgga
cggcgcacgcgcaaggcgagcgaggccggcgaggaagcggttacggccgaggcggctccc
gccgagcccgcagccgaggtcgccccggccgtcagcaccgtgcgcgagccggctcccgtg
gcccccgcgcccgaaccagcggccgagcacgtcgcggaagccaagccgcgccgccgccgt
tcgacggtgcgcgaacccgccccggtggtgaccaccgagacgtccgccgccgtggcgccg
gaagtgccggctgccgcgccggaagcgtccgctcccgaggaagcggcgccggaagcgcct
gcgccggagcccgccgctgccgagccggccccggccgcgccggccgccgcggaatccgac
cgcccgcgccgcaccggctggtggcagcgcaagatcttcggcgagtga
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