Entry |
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Name |
(GenBank) DNA-directed RNA polymerase, beta' subunit
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KO |
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Organism |
sno Ancylobacter novellus
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Pathway |
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Brite |
KEGG Orthology (KO) [BR:sno00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Snov_1439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:sno03021]
Snov_1439
03400 DNA repair and recombination proteins [BR:sno03400]
Snov_1439
Enzymes [BR:sno01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Snov_1439
Transcription machinery [BR:sno03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Snov_1439
DNA repair and recombination proteins [BR:sno03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Snov_1439
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
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Position |
1504705..1508895
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AA seq |
1396 aa
MNQEVMNLFNPAAPAPTFDQIKISIASPEKILSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERILYFEYYCVIEPGLTPLKERQLLSEEDYLRAQEEYGEDSFTA
LIGAEAIRELLRGMDLEKIAGNLRKEIAEATTELKPKKLAKRLKIVEAFQESGNKPEWMI
LTHVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELKAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELKLHQCGLPKKMALELFKPFIYSRLDAKGLSATVKQAKKLVEKERPEVWDILDEVIRE
HPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQL
EARVLMMSTNNILHPANGAPIIVPSQDIVLGLYYLTMMRDNEPGEGMAFANMGEIDHALG
NKVITLHTKVRGRYIGVDENGNEVSKIYETTPGRMKLGELLPRSSKITFDVVNKLMTKKE
ISNMIDTVYRHCGQKETVIFCDRIMSLGFHNAFRAGISFGKDDMVVPSKKWDMVEETRAL
TKEYEQQYNDGLITQGEKYNKVVDAWGKCSARLADEMMAEISAVKTDPKTGRAKPINSIY
MMAHSGARGSREQMRQLAAMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDSIITIRDCGTDNGIAMRAIVDAGQIVATLGSRVLGRT
TAEDVIEGGTGNVLIPAGHMIDEADVERISKAGVQEIKIRSVLTCEAKNGVCGTCYGRDL
ARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLSEQSFIEASFEGTVKIRNRN
VVRNSEGELIAMSRNLSVLIVDHDGSEKAAHRIQFGAKLKVDEGDAIKRGQRIAEWDPYT
RPILTEVEGTVGYEDLVEGASLSETVDESTGIAKRVVTDWRTGRGSELRPSLVVKGPDGK
VLKLQRGGDARYTLPVDAILSADPGSHIKAGDVLARVPMESAKTRDITGGLPRVAELFEA
RRPKDAAIIAEISGTIRFGKDYKNKRRLSIEPQDSTDDTVEYLIPKGKHIHLQDGDLVEK
GDFIVDGNPAPHDILAIKGVEELAAYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEI
DDAGDSDLLTNEQIDASELNELNEVLIAEGKKPAAGHPVLLGITKASLQTRSFISAASFQ
ETTRVLTEAAVNGKSDDLAGLKENVIVGRLIPAGTGAQMSKLRVTATTRDDLIAAQNEQD
NGASNAPQIEGPAAAE |
NT seq |
4191 nt +upstreamnt +downstreamnt
atgaatcaagaggtcatgaatctcttcaacccggcggcgccggcgccgactttcgatcag
atcaagatctcgatcgcgagtccggaaaagatcctgtcgtggtccttcggtgagatcaag
aagccggagaccatcaactaccgcacgttcaagcccgagcgtgacggtctgttctgcgcg
cgcatcttcggcccgatcaaggactacgagtgcttgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgagaagtgcggcgtcgaggtcacgctgtcgcgcgtgcgccgc
gagcgcatgggccacatcgagctcgccgcccccgtcgcgcacatctggttcttgaagtcg
ctgccgagccgcatcggcctgctgctcgacatgacgctcaaggacctcgagcgcatcctg
tacttcgagtactactgcgtcatcgagccgggcctcaccccgctgaaggaacgtcagctc
ctctcggaagaggactatctgcgcgcccaggaagagtatggcgaggattcgttcaccgcg
ctgatcggcgctgaggcgatccgcgagctgctgcgcggcatggacctcgagaagatcgcc
ggcaacctgcgcaaggagatcgccgaggcgaccacagagctcaagcctaagaagctcgcc
aagcgcctgaagatcgtcgaggccttccaggagtccggcaacaagccggagtggatgatc
ctgacgcatgtcccggtgatcccgccggacctgcgcccgctcgtcccgctggatggcggc
cgcttcgcgacctccgacctcaacgacctgtaccgccgcgtcatcaaccgcaacaatcgc
ctgaagcgactgatcgagctgaaggcgccggacatcatcatccgcaacgagaagcgcatg
cttcaggaagcggtcgatgcgctgttcgacaacggccgtcgcggccgcgtcatcacgggc
gccaacaagcgcccgctgaagtcgctcgccgacatgctgaagggcaagcagggccggttc
cgccagaacctgctcggcaagcgcgtcgactattccggccgttcggtgatcgtcgtcggt
cccgagctgaagctgcaccagtgcggcctgcctaagaagatggcgctggagctgttcaag
cccttcatctattcgcgcctcgacgccaagggcctgtccgccaccgtgaagcaggcgaag
aagctcgtcgagaaggagcgtcccgaggtgtgggacatcctcgacgaggtgatccgcgag
catccggtgatgctgaaccgcgccccgacgctgcaccgcctgggcatccaggcgttcgag
ccggtgctgatcgagggcaaggcgatccagcttcacccgctggtctgcgccgccttcaac
gccgacttcgacggcgaccagatggcggttcacgtgccgctgtccatcgaggcgcagctc
gaagcccgtgtgctgatgatgtcgaccaacaacatcctgcacccggcgaacggcgcgccg
atcatcgtgccgtcgcaggacatcgtgctcggcctctactacctcaccatgatgcgcgac
aacgagcccggcgagggcatggcgttcgcgaacatgggcgagatcgaccacgccctcggc
aacaaggtcatcaccctgcacaccaaggtgcgcgggcggtacatcggcgtggacgagaac
ggcaacgaggtctccaagatctacgagaccacgccgggccgcatgaagctcggcgagctg
ctaccgcgcagttccaagatcaccttcgacgtcgtcaacaagctgatgaccaagaaggaa
atctcgaacatgatcgacaccgtctaccgccactgcggtcagaaggagacggtcatcttc
tgcgaccggatcatgtcgctcggcttccacaacgccttccgcgccggcatctcgttcggc
aaggacgacatggtggtgccctccaagaagtgggacatggtcgaggagacccgtgcgctc
accaaggagtacgagcagcagtacaatgacggcctgatcacccagggcgagaagtacaac
aaggtcgtcgacgcctggggcaagtgctccgcgcgcctggccgacgagatgatggccgag
atttcggcggtgaagaccgaccccaagacgggccgggctaagccgatcaactcgatctac
atgatggcgcattccggcgcgcgcggctcgcgcgagcagatgcgccagctggcggccatg
cgcggcctgatggccaagccttcgggcgagatcatcgagacgccgatcatctcgaacttc
aaggaaggcctctcggttctcgaatactttaactcgacccacggcgctcgtaagggcctc
gcggacaccgcgctgaagaccgcgaactcgggctacctcacccgccgtctggtcgacgtg
gcgcaggacagcatcatcacgatccgcgattgcggcaccgacaacggcatcgccatgcgc
gccatcgtcgacgccggccagatcgtcgcgacgctgggctcgcgcgtgctcggccgcacc
acggcggaggacgtgatcgagggcggcacgggcaacgtgctgatcccggccggccacatg
atcgacgaggccgatgtcgagcgcatcagcaaggcgggcgtgcaggagatcaagatccgc
tccgtgctcacctgcgaggccaagaacggcgtctgcggcacctgctatggccgcgacctc
gcgcgcggcacgccggtgaacatcggcgaggcggtcggcgtcatcgcggcgcagtcgatc
ggggagccgggcacccagctcacgatgcgcaccttccacatcggtggcgcggcgcagctc
tccgagcagtccttcatcgaggcctccttcgagggcacggtgaagatccgcaaccgcaac
gtggtgcggaactcggaaggcgagctgatcgcgatgagccgcaacctctccgtcctgatc
gtcgatcatgacggctcggagaaggcggcgcaccgcatccagttcggcgccaagctgaag
gtggacgagggcgacgcgatcaagcgcggccagcgcatcgccgagtgggacccttacacc
cgcccgatcctcaccgaggtcgagggtacggtgggctacgaggacctggtggaaggcgcc
tcgctgagcgagacggtcgatgaatcgaccggcatcgccaagcgcgtcgttaccgactgg
cgcaccggtcgcggctctgagctgcgtccctcgctggtggtgaaggggccggacggcaag
gtgctgaagctgcagcgcggcggcgacgcccgctacacgctgccggtcgatgcgatcctc
tcggccgatccgggttcgcacatcaaggccggcgacgtgcttgcccgcgtgccgatggaa
agcgccaagacccgcgacatcacgggcggtctgccgcgcgtggcggagctgttcgaggct
cgtcgtccgaaggacgcggcgatcatcgccgagatctccggcacgatccgcttcggcaag
gactacaagaacaagcgccgcctctccatcgagccgcaggactcgaccgacgacacggtc
gagtacctgatcccgaagggcaagcacatccacctgcaggatggcgacctcgtcgagaag
ggcgacttcatcgtcgacggcaacccggcgccgcacgacatcttggcgatcaagggcgtc
gaggaactcgccgcctatctggtcaacgagatccaggaggtctaccggctgcagggcgtg
ctcatcaacgacaagcacatcgaggtgatcgtccgccagatgctgcagaaggtggagatc
gacgacgccggcgacagcgacctgctcaccaacgagcaaatcgacgcttcggagttgaac
gagctgaacgaggtgctcatcgccgagggcaagaagcctgcggccggccacccggtgctg
ctcggcatcaccaaggcgagcctgcagacgcgctccttcatctcggccgcctccttccag
gagacgacccgcgtgctcaccgaggcggcggtcaacggcaagtccgacgacctcgccggc
ctcaaggagaacgtcatcgtcggccgcctcatcccggcgggcaccggcgcgcagatgtcg
aagctccgcgtcactgctacgacgcgcgacgatctcatcgccgcgcagaacgagcaggac
aacggcgccagcaacgcgccgcagatcgaaggtcccgccgccgccgagtga |