KEGG   Ancylobacter novellus: Snov_1439
Entry
Snov_1439         CDS       T01258                                 
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
sno  Ancylobacter novellus
Pathway
sno03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Snov_1439
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sno03021]
    Snov_1439
   03400 DNA repair and recombination proteins [BR:sno03400]
    Snov_1439
Enzymes [BR:sno01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Snov_1439
Transcription machinery [BR:sno03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Snov_1439
DNA repair and recombination proteins [BR:sno03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Snov_1439
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid RnfC_N
Other DBs
NCBI-ProteinID: ADH88749
UniProt: D7A944
LinkDB
Position
1504705..1508895
AA seq 1396 aa
MNQEVMNLFNPAAPAPTFDQIKISIASPEKILSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERILYFEYYCVIEPGLTPLKERQLLSEEDYLRAQEEYGEDSFTA
LIGAEAIRELLRGMDLEKIAGNLRKEIAEATTELKPKKLAKRLKIVEAFQESGNKPEWMI
LTHVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELKAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELKLHQCGLPKKMALELFKPFIYSRLDAKGLSATVKQAKKLVEKERPEVWDILDEVIRE
HPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQL
EARVLMMSTNNILHPANGAPIIVPSQDIVLGLYYLTMMRDNEPGEGMAFANMGEIDHALG
NKVITLHTKVRGRYIGVDENGNEVSKIYETTPGRMKLGELLPRSSKITFDVVNKLMTKKE
ISNMIDTVYRHCGQKETVIFCDRIMSLGFHNAFRAGISFGKDDMVVPSKKWDMVEETRAL
TKEYEQQYNDGLITQGEKYNKVVDAWGKCSARLADEMMAEISAVKTDPKTGRAKPINSIY
MMAHSGARGSREQMRQLAAMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDSIITIRDCGTDNGIAMRAIVDAGQIVATLGSRVLGRT
TAEDVIEGGTGNVLIPAGHMIDEADVERISKAGVQEIKIRSVLTCEAKNGVCGTCYGRDL
ARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLSEQSFIEASFEGTVKIRNRN
VVRNSEGELIAMSRNLSVLIVDHDGSEKAAHRIQFGAKLKVDEGDAIKRGQRIAEWDPYT
RPILTEVEGTVGYEDLVEGASLSETVDESTGIAKRVVTDWRTGRGSELRPSLVVKGPDGK
VLKLQRGGDARYTLPVDAILSADPGSHIKAGDVLARVPMESAKTRDITGGLPRVAELFEA
RRPKDAAIIAEISGTIRFGKDYKNKRRLSIEPQDSTDDTVEYLIPKGKHIHLQDGDLVEK
GDFIVDGNPAPHDILAIKGVEELAAYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEI
DDAGDSDLLTNEQIDASELNELNEVLIAEGKKPAAGHPVLLGITKASLQTRSFISAASFQ
ETTRVLTEAAVNGKSDDLAGLKENVIVGRLIPAGTGAQMSKLRVTATTRDDLIAAQNEQD
NGASNAPQIEGPAAAE
NT seq 4191 nt   +upstreamnt  +downstreamnt
atgaatcaagaggtcatgaatctcttcaacccggcggcgccggcgccgactttcgatcag
atcaagatctcgatcgcgagtccggaaaagatcctgtcgtggtccttcggtgagatcaag
aagccggagaccatcaactaccgcacgttcaagcccgagcgtgacggtctgttctgcgcg
cgcatcttcggcccgatcaaggactacgagtgcttgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgagaagtgcggcgtcgaggtcacgctgtcgcgcgtgcgccgc
gagcgcatgggccacatcgagctcgccgcccccgtcgcgcacatctggttcttgaagtcg
ctgccgagccgcatcggcctgctgctcgacatgacgctcaaggacctcgagcgcatcctg
tacttcgagtactactgcgtcatcgagccgggcctcaccccgctgaaggaacgtcagctc
ctctcggaagaggactatctgcgcgcccaggaagagtatggcgaggattcgttcaccgcg
ctgatcggcgctgaggcgatccgcgagctgctgcgcggcatggacctcgagaagatcgcc
ggcaacctgcgcaaggagatcgccgaggcgaccacagagctcaagcctaagaagctcgcc
aagcgcctgaagatcgtcgaggccttccaggagtccggcaacaagccggagtggatgatc
ctgacgcatgtcccggtgatcccgccggacctgcgcccgctcgtcccgctggatggcggc
cgcttcgcgacctccgacctcaacgacctgtaccgccgcgtcatcaaccgcaacaatcgc
ctgaagcgactgatcgagctgaaggcgccggacatcatcatccgcaacgagaagcgcatg
cttcaggaagcggtcgatgcgctgttcgacaacggccgtcgcggccgcgtcatcacgggc
gccaacaagcgcccgctgaagtcgctcgccgacatgctgaagggcaagcagggccggttc
cgccagaacctgctcggcaagcgcgtcgactattccggccgttcggtgatcgtcgtcggt
cccgagctgaagctgcaccagtgcggcctgcctaagaagatggcgctggagctgttcaag
cccttcatctattcgcgcctcgacgccaagggcctgtccgccaccgtgaagcaggcgaag
aagctcgtcgagaaggagcgtcccgaggtgtgggacatcctcgacgaggtgatccgcgag
catccggtgatgctgaaccgcgccccgacgctgcaccgcctgggcatccaggcgttcgag
ccggtgctgatcgagggcaaggcgatccagcttcacccgctggtctgcgccgccttcaac
gccgacttcgacggcgaccagatggcggttcacgtgccgctgtccatcgaggcgcagctc
gaagcccgtgtgctgatgatgtcgaccaacaacatcctgcacccggcgaacggcgcgccg
atcatcgtgccgtcgcaggacatcgtgctcggcctctactacctcaccatgatgcgcgac
aacgagcccggcgagggcatggcgttcgcgaacatgggcgagatcgaccacgccctcggc
aacaaggtcatcaccctgcacaccaaggtgcgcgggcggtacatcggcgtggacgagaac
ggcaacgaggtctccaagatctacgagaccacgccgggccgcatgaagctcggcgagctg
ctaccgcgcagttccaagatcaccttcgacgtcgtcaacaagctgatgaccaagaaggaa
atctcgaacatgatcgacaccgtctaccgccactgcggtcagaaggagacggtcatcttc
tgcgaccggatcatgtcgctcggcttccacaacgccttccgcgccggcatctcgttcggc
aaggacgacatggtggtgccctccaagaagtgggacatggtcgaggagacccgtgcgctc
accaaggagtacgagcagcagtacaatgacggcctgatcacccagggcgagaagtacaac
aaggtcgtcgacgcctggggcaagtgctccgcgcgcctggccgacgagatgatggccgag
atttcggcggtgaagaccgaccccaagacgggccgggctaagccgatcaactcgatctac
atgatggcgcattccggcgcgcgcggctcgcgcgagcagatgcgccagctggcggccatg
cgcggcctgatggccaagccttcgggcgagatcatcgagacgccgatcatctcgaacttc
aaggaaggcctctcggttctcgaatactttaactcgacccacggcgctcgtaagggcctc
gcggacaccgcgctgaagaccgcgaactcgggctacctcacccgccgtctggtcgacgtg
gcgcaggacagcatcatcacgatccgcgattgcggcaccgacaacggcatcgccatgcgc
gccatcgtcgacgccggccagatcgtcgcgacgctgggctcgcgcgtgctcggccgcacc
acggcggaggacgtgatcgagggcggcacgggcaacgtgctgatcccggccggccacatg
atcgacgaggccgatgtcgagcgcatcagcaaggcgggcgtgcaggagatcaagatccgc
tccgtgctcacctgcgaggccaagaacggcgtctgcggcacctgctatggccgcgacctc
gcgcgcggcacgccggtgaacatcggcgaggcggtcggcgtcatcgcggcgcagtcgatc
ggggagccgggcacccagctcacgatgcgcaccttccacatcggtggcgcggcgcagctc
tccgagcagtccttcatcgaggcctccttcgagggcacggtgaagatccgcaaccgcaac
gtggtgcggaactcggaaggcgagctgatcgcgatgagccgcaacctctccgtcctgatc
gtcgatcatgacggctcggagaaggcggcgcaccgcatccagttcggcgccaagctgaag
gtggacgagggcgacgcgatcaagcgcggccagcgcatcgccgagtgggacccttacacc
cgcccgatcctcaccgaggtcgagggtacggtgggctacgaggacctggtggaaggcgcc
tcgctgagcgagacggtcgatgaatcgaccggcatcgccaagcgcgtcgttaccgactgg
cgcaccggtcgcggctctgagctgcgtccctcgctggtggtgaaggggccggacggcaag
gtgctgaagctgcagcgcggcggcgacgcccgctacacgctgccggtcgatgcgatcctc
tcggccgatccgggttcgcacatcaaggccggcgacgtgcttgcccgcgtgccgatggaa
agcgccaagacccgcgacatcacgggcggtctgccgcgcgtggcggagctgttcgaggct
cgtcgtccgaaggacgcggcgatcatcgccgagatctccggcacgatccgcttcggcaag
gactacaagaacaagcgccgcctctccatcgagccgcaggactcgaccgacgacacggtc
gagtacctgatcccgaagggcaagcacatccacctgcaggatggcgacctcgtcgagaag
ggcgacttcatcgtcgacggcaacccggcgccgcacgacatcttggcgatcaagggcgtc
gaggaactcgccgcctatctggtcaacgagatccaggaggtctaccggctgcagggcgtg
ctcatcaacgacaagcacatcgaggtgatcgtccgccagatgctgcagaaggtggagatc
gacgacgccggcgacagcgacctgctcaccaacgagcaaatcgacgcttcggagttgaac
gagctgaacgaggtgctcatcgccgagggcaagaagcctgcggccggccacccggtgctg
ctcggcatcaccaaggcgagcctgcagacgcgctccttcatctcggccgcctccttccag
gagacgacccgcgtgctcaccgaggcggcggtcaacggcaagtccgacgacctcgccggc
ctcaaggagaacgtcatcgtcggccgcctcatcccggcgggcaccggcgcgcagatgtcg
aagctccgcgtcactgctacgacgcgcgacgatctcatcgccgcgcagaacgagcaggac
aacggcgccagcaacgcgccgcagatcgaaggtcccgccgccgccgagtga

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