Ancylobacter novellus: Snov_1848
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Entry
Snov_1848 CDS
T01258
Name
(GenBank) RNA-metabolising metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sno
Ancylobacter novellus
Pathway
sno03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sno00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Snov_1848
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sno03019
]
Snov_1848
Messenger RNA biogenesis [BR:
sno03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Snov_1848
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ADH89151
UniProt:
D6ZYN9
LinkDB
All DBs
Position
complement(1933260..1934948)
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AA seq
562 aa
AA seq
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MSKWPDELVFAPLGGVGEIGMNLGLYGYGPRNRRKWLAVDLGISFAPPEVPGIDIIMPDV
SFLAHEAEHGNLAGLIITHGHEDHVGGLVDLWPRLGCPVYTTPFTAALAEARRLGEPGAP
KIPFHVVPSGGRAKIGPFEVEFVPVAHSIPDSHALAIRTPLGLVVHTGDWKIDPTPVVGN
VTDPARFTALGDEGVRAVVCDSTNAFREGISPSETDVQQVLAELIAAAPYRVAVTTFASN
VARVRSIAEAAIKAGREVVLVGRAMERVVTVAREQHLLDGLPPFRPVDAYGFLPRDKVVA
ILTGSQGEPRAALARIADDDHPEIALSPGDQVIFSSRTIPGNERAVNRIINALVLQGVKI
ITDRDALVHVSGHPRRGELEQMYQWLRPQVAVPVHGEPLHLSEHADLARRMGAREVIRLV
DGDMVRLISSDPALGAEVIEEVPAGRLYKDGQVLVSSDDPAVAERRRMSFSGLISVAIAM
TEKGEVVGDPMIDLSGLPRLGLGGKPLDEVVEEAVLDCLDGLPKPRRRDPDAVSESVTRA
VRSSVNAAWGKKPLCHVLVITV
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaagtggccggacgagctggtcttcgctcccctcgggggcgtgggcgaaatcggc
atgaatctcgggctgtatggctacggcccgcgcaaccggcgcaaatggctcgcggtcgac
ctcggcatctccttcgccccgcccgaggtgccgggcatcgacatcatcatgccggacgtc
tccttcctcgcccatgaggccgagcacggcaacctcgccgggctgatcatcacccacggc
catgaggaccatgtcggcgggctggtcgacctgtggccgcgcctcggctgcccggtctac
acgacgcccttcacggccgcgctggccgaggcccgccgcctgggcgagccgggcgcgccg
aagatcccgttccatgtcgtgccctcgggcgggcgggcgaagatcgggcctttcgaggtc
gagttcgtccccgtcgcccattccatccccgacagccacgcgctcgccatccgcacgccg
ctcggtctcgtcgtgcacaccggcgactggaagatcgacccgaccccggtggtcggcaac
gtcaccgatcccgcccgcttcaccgcgctgggcgacgagggcgtgcgcgccgttgtctgc
gattccaccaacgccttccgcgagggcatctcgccctccgagaccgacgtgcagcaggtg
ctggccgaactgatagccgccgcgccctaccgcgtggcggtgacgaccttcgcctccaac
gtcgcccgtgtccgctctatcgccgaggcggcgataaaggcgggcagggaagtggtgctc
gtcggccgcgccatggagcgcgtggtgacggtggcgcgcgagcagcatctgctcgacggc
ctgccgcccttccgtccggtcgacgcctatggcttcctgccgcgcgacaaggtggtggcg
attctcaccggcagccagggcgagccgcgcgcggccctcgcccgcatcgccgacgacgac
catcccgagatcgcgctctcgcccggcgaccaggtgatcttctcctcgcgcaccatcccc
ggcaatgagcgggcggtgaaccgaatcatcaatgcgctggtgctgcagggggtgaaaatc
atcaccgaccgcgacgcgctggtgcacgtctccggccatccccgccggggcgagctggag
cagatgtaccagtggctgcgcccgcaggtggcggtgccggtgcatggcgagccgctgcat
ctgtccgagcatgccgacctcgcccgccgcatgggcgcgcgcgaggtgatccgcctcgtc
gacggcgacatggtgcgcctcatctcctccgatcccgcgctcggcgccgaggtgatcgag
gaagtgcccgctggccggctctacaaggacgggcaggtgctggtcagttccgacgacccg
gcggtcgccgagcgccggcgcatgtccttctcgggcctcatctccgtcgccattgccatg
accgagaagggcgaggtggtgggcgacccgatgattgatctctccggcctgccgcgcctc
ggcctcggcggcaagccgctcgacgaagtggtggaggaggcggtcctcgattgtctcgac
ggcctgcccaagcctcgccggcgcgaccccgacgcggtctccgaatccgtcacccgtgcg
gtgcgcagctcggtgaacgcagcctggggcaagaaaccgctctgccatgtgctggtgatc
acggtatga
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