Ancylobacter novellus: Snov_3478
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Entry
Snov_3478 CDS
T01258
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sno
Ancylobacter novellus
Pathway
sno03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sno00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Snov_3478
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sno03019
]
Snov_3478
Enzymes [BR:
sno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Snov_3478
Messenger RNA biogenesis [BR:
sno03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Snov_3478
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
UTP25
CMS1
Motif
Other DBs
NCBI-ProteinID:
ADH90752
UniProt:
D7A9J0
LinkDB
All DBs
Position
3659476..3661149
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AA seq
557 aa
AA seq
DB search
MKERYLNTFPELGLAEPILKALAEANHSTPTPIQAQAVPQVLAGRDLVGIAQTGTGKTAA
FALPILHHLVTKRLRPERRSARALVLSPTRELSGQILESFRLYGKHVRPSTALAIGGVPI
GRQARSLAGGVDVLVATPGRLVDLLENNAVRLDMVEVFVLDEADQMLDMGFIHAIRSIVA
RLPHKRRNLFFSATMPREIEKLADTLLSDPVRVAVTPVAKTADKIEQKVFFTDRAGKPNL
LVEVLGEPTLDRALVFSRTKHGADRVVKSLAGAGINAEAIHGNKSQPQRERALAAFRQGV
VKVLVATDIAARGIDVPGVSHVINYDLPNVPESYVHRIGRTARAGREGIAISFCDGEERP
FLRDIERLIKLTIPSVDRRGETRRDGTTRPVAGREDNSFREERGPREHRGPREDRGPRQD
RGPRREGEQRPFHRGPRPEHRSGEARSEERGPRREGEQRPFHRGPRPDHRGGEARSEERG
FRPERPHDGHRKDAHRHDGPRPDAHRADGQRQDGHRHEGHRHEGHRHEGARPEGVRRDGP
PREGRRPPRRKSFRPAN
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaacgctacttgaacactttccctgagctcggcctcgccgagccgatcctgaaa
gccctcgcggaagcgaaccattccactcccacgccgatccaggcccaggccgtgccgcag
gtgctcgccggccgcgacctcgtcggcatcgcccagacgggcaccggcaagaccgccgcc
ttcgcgctgccgatcctgcaccacctcgtcaccaagcgcctgcgccccgagcgccgctcg
gcccgcgcgctggtgctgagcccgacccgggaactctccggccagatcctcgagagcttc
cggctctacggcaagcatgtgcgcccctcgaccgcgctcgccatcggcggcgtgccgatc
ggccggcaggcgcgctcgctcgccggcggcgtcgacgtgctggtggccacgcccggccgc
ctcgtcgacctgctcgaaaacaatgcggtgcggctcgacatggtcgaggtcttcgtcctc
gacgaagccgaccagatgctcgacatgggcttcatccacgccatccgctccatcgtcgcc
cggctcccgcacaagcgccgcaacctgttcttctccgccaccatgccgcgcgagatcgag
aagctcgccgacacgctgctgagcgacccggtgcgcgtggcggtgacgccggtcgccaag
accgccgacaagatcgagcagaaggtgttcttcaccgatcgcgccggcaagccgaacctc
ctcgtcgaggtgctgggcgaacccacgctcgaccgggcgctggtgttctcgcgcaccaag
cacggcgccgaccgcgtggtgaagagcctcgcgggcgccggcatcaacgccgaggcgatc
cacggcaacaagtcccagccgcagcgcgagcgcgcgcttgccgccttccggcagggcgtg
gtgaaggtgctggtggcgaccgacatcgccgcgcgcggcatcgacgtgccgggcgtcagc
cacgtcatcaattacgacctccccaacgtgccggagagctatgtccaccgcatcggccgc
accgcgcgcgccggccgcgagggcatcgccatctccttctgcgacggcgaggagcgcccg
ttcctgcgcgacatcgagcggctgatcaagctgaccatcccctcggtcgaccggcgcggc
gagacccgccgcgacggcaccacccggccggtggccggccgcgaggacaacagcttccgc
gaggagcgtggtccgcgcgagcatcgcggtccccgcgaagaccgtggtccgcgtcaggat
cgcggtccgcgccgcgagggcgagcagcgtccgttccatcgtggtccgcgtcccgagcat
cgcagcggcgaggcgcgtagcgaggaacgcggcccgcgccgcgagggcgaacagcgcccg
ttccatcgcggtccccgcccggatcatcgcggcggcgaggcccgcagcgaggagcgcggc
ttccgtcccgagcgcccgcatgacggccaccgcaaggacgcgcatcgtcacgacgggccg
cgcccggatgcgcaccgcgccgacgggcagcgccaggacggccaccgtcatgaagggcat
cgtcacgagggccatcgccacgaaggcgcccggcccgagggcgtgcgccgtgacggcccg
ccgcgcgagggccggcgcccgccgcgccgcaagtcgttccgcccggcgaactga
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