Sphingomonas nostoxanthinifaciens: K8P63_01410
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Entry
K8P63_01410 CDS
T08862
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
snos
Sphingomonas nostoxanthinifaciens
Pathway
snos03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
snos00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K8P63_01410 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snos03021
]
K8P63_01410 (rpoC)
03400 DNA repair and recombination proteins [BR:
snos03400
]
K8P63_01410 (rpoC)
Enzymes [BR:
snos01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K8P63_01410 (rpoC)
Transcription machinery [BR:
snos03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K8P63_01410 (rpoC)
DNA repair and recombination proteins [BR:
snos03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K8P63_01410 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UAK24902
LinkDB
All DBs
Position
complement(292626..296900)
Genome browser
AA seq
1424 aa
AA seq
DB search
MNELTNFANPVAKAETFDQIKIGIASPDRIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFEAYVVIEPGLTPLEKYQLLTEDELLTAQDEYGEDAFSAG
IGAEAVKQMLIDLDLEGERDALLKELAETKSELKPKKIIKRLKVVESFIDSGNRPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QESVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSMLKENEPGEGMAIGDMPEVHQALNA
GAVTLHTRITTRVPQTDENGQTYLKRVETTPGRMLIAETLPKSHKVPFETVNRLLTKKEI
GDVIDIVYRHTGQKETVLFADGIMSLGFRHAFKAGISFGKDDMVIPAAKEPLVDETRSLV
KDYEQQYQDGLITQQEKYNKVIDAWSRCGDRVAAEMMKEIQAVKKTDDGREAPINAIYMM
AHSGARGSQAQIKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVSQDCVVVELDCGTERALEMRAIVQGGATIASLGERILGRTTA
EDIVDSKTGDVVAPEGTLLDEALVAKIEAVAPQAVKIRSPLVCESKGGVCAACYGRDLAR
GTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSNLEAVADGTIQYRDVPTI
LNPRGQRVTLSRSGEIAIVDMDGRERSTHRLPYGAQILYEDGHIVTKGDRIAQWDPAYMP
VITDKKGMVRFQDLIENRTVREESDETTGLTQRVVLEDQGRSKKDDLRPRITLLDEQSGE
AGISRLAPGAVIAVEDGQMVEAGEVLARVPREAARTRDITGGLPRVAELFEARKPKENAI
IAKVSGRVEFGKDYKAKRKVIIRPDDGSEPVEYLVPKSKTIDAQEGDYVKRGDNLIGGSP
DPHDILEVLGIEPLAEYLVSEIQEVYRLQGVKINDKHIETIVRQMLQKVEITAAGDTTLL
PGEQVDREEMDEVNAKAALTGGAPAEGKPILLGITKASLQTRSFISAASFQETTRVLTEA
SVQGKIDTLNGLKENVIVGRLIPAGTGAGMNRLRVTATSRDAALRASHRGLAASLVAPES
AAEEHAAELARTPRDSTGTGSDPLAEVVATGHGTDADAGDYLNS
NT seq
4275 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactgaccaatttcgccaatccggtcgcgaaggccgagaccttcgaccagatc
aagatcggcatcgcctcgcccgaccgcatccgctcgtggagcttcggcgagatcaagaag
cccgagacgatcaactatcgcacgttcaagcccgagcgtgacggcctgttctgcgcgcgc
atcttcggtccgatcaaggattacgagtgcctgtgcggcaagtacaagcgcatgaagtac
aagggcatcgtctgcgagaagtgcggcgtcgaggtcaccgtctcgaaggtccgccgcgag
cggatgggccatatcgagctcgccgccccggtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgcataggcctgctgctcgacatgcagctcaagcagctcgagcgcgtgctgtat
ttcgaggcctatgtggtgatcgagccgggcctgaccccgctcgaaaagtatcagctcctc
accgaggacgagctgctcaccgcgcaggacgaatatggcgaggacgccttctccgccggg
atcggcgccgaagcggtcaagcagatgctcatcgatctcgacctcgagggcgagcgtgac
gcgctgctcaaggagctggccgagacgaagtccgagctgaagcccaagaagatcatcaag
cggctgaaggtcgtcgagagcttcatcgattcgggcaaccgcccggagtggatgatcctc
gacgtcgtgccggtcatcccgcccgagctgcgcccgctggtgccgctggatggcggccgc
ttcgcgacctccgatctcaacgatttgtatcgtcgcgtcatcaaccgcaacaaccgcctc
aagcggctgatggagctgcgcgcgccggacatcatcgtccgcaacgagaagcgcatgctg
caggagtcggtcgacgccttgttcgacaatggtcgtcgcggccgcacgatcacgggcgcc
aacaagcgtccgctgaagtcgctgtccgacatgctgaagggcaagcagggccgcttccgc
cagaatctgctcggcaagcgcgtcgactattcgggccgttcggtgatcgtgaccggtccc
gagctcaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaagccg
ttcatctacgcgcgcctcgacgccaagggcctcagcatgacgctgaagcaggcgaagaag
tgggtcgagaaggagcgcaaggaagtctgggacatcctcgacgaggtgatccgcgagcat
ccggtgctgctcaatcgcgcgccgacgctccaccgtctcggcatccaggcgttcgagccc
gtgctgatcgagggcaaggcgatccagctccacccgctggtctgctctgcgttcaacgcc
gacttcgacggcgaccagatggccgtccacgttccgctgagcctagaggcgcagctggaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctctcgcccgccaacggcaagccgatc
atcgtgccgtcgcaggacatggtgcttggcctctattacctgtcgatgctcaaggagaat
gagcccggcgagggaatggcgatcggcgacatgcccgaggtgcatcaggcgctcaacgcc
ggcgcggtgacgctccatacccggatcaccacccgcgtcccgcagaccgacgagaatggc
cagacctacctcaagcgggtcgagaccacgccgggccgcatgctgatcgccgagacgctg
ccgaagagccacaaggtgccgttcgagacggtcaaccgcctgctgaccaagaaggagatc
ggcgacgtcatcgacatcgtctatcgccacaccggccagaaggagacggtgctgttcgcc
gacggcatcatgagcctcggcttccgccacgcgttcaaggcgggcatctcgttcggcaag
gacgacatggtgatcccggcggcgaaggagccgctggtcgacgagacgcgctcgctcgtg
aaggattacgagcagcaatatcaggacggcctgatcacccagcaggaaaagtacaacaag
gtgatcgacgcctggtcgcgctgcggcgaccgcgtggcggccgagatgatgaaggagatc
caggcggtcaagaagaccgacgacggtcgtgaggcgccgatcaacgccatctacatgatg
gcgcattcgggcgcgcgtggttcgcaggcgcagatcaagcagcttgccggcatgcgcggc
ctgatggccaagccgtcgggcgagatcatcgagacgccgatcatctcgaacttcaaggaa
ggcctgaccgtcctcgaatatttcaactccacccacggcgcccgcaagggtctcgcggat
acggcgttgaagaccgccaactccggttacctcacccgccgtctggtcgacgtgtcgcag
gattgcgtcgtcgtcgagctcgactgcggcaccgagcgggcgctggagatgcgtgcgatc
gtgcagggcggtgcgaccatcgcctcgctcggcgagcgcatcctcggccgcaccacggcg
gaggacatcgtcgactccaagacgggtgacgtcgtcgcgcctgagggcactttgctcgac
gaggcgctcgtcgccaagatcgaggcggtggctccgcaggccgtgaagatccgcagcccg
ctggtctgcgaatcgaagggcggcgtctgcgcggcctgctacggacgcgatctcgcccgc
ggcacgccggtcaacatcggcgaggcggtgggcgtcatcgccgcgcagtcgatcggcgag
ccgggcacgcagctgacgatgcggaccttccacatcggcggcgcggcgcagctcaacgag
cagtcgaaccttgaggcggtggccgacggcacgatccagtatcgtgacgttccgaccatc
ctcaacccgcgcgggcagcgtgtcacgctgtcgcgttcgggcgagatcgcgatcgtcgac
atggacgggcgcgagcgttcgacccatcgcctgccctacggcgcgcagatcctgtacgag
gacggccatatcgtcaccaagggcgatcgtatcgcccagtgggatccggcctacatgccg
gtcatcaccgacaagaagggcatggtccgcttccaggatctgatcgagaaccgcaccgtg
cgcgaggaatcggacgagacgaccggtctcacccagcgcgtcgtgctcgaggatcagggc
cgttccaagaaggacgacctgcgcccgcgcatcacgctgctggacgagcagtcgggcgag
gccggcatcagccgcctggcaccgggcgcggtcatcgcggtcgaggacgggcagatggtc
gaggccggcgaagtgctggcacgcgttccgcgcgaagcggcgcgtacccgcgacatcacc
ggcggtctgccgcgcgtcgccgagctcttcgaggcgcgcaagcccaaggagaatgcgatc
atcgccaaggtctccggtcgggtcgagttcggcaaggactacaaggccaagcgcaaggtc
atcatccgtccggacgatggctcggagccggtcgagtatctggtgccgaagtcgaagacg
atcgacgcgcaggaaggcgattacgtcaagcgcggcgacaatctgatcggcggctcgccc
gatccgcacgacattctcgaggtgctcggcatcgagccgctcgcggaatatctcgtgtcg
gaaatccaggaggtctatcgtctgcagggcgtgaagatcaacgacaagcacatcgagacg
atcgtccgtcagatgctgcagaaggtcgagatcaccgcggccggcgacaccaccctgctc
cctggcgagcaggtggatcgcgaggagatggacgaggtcaacgccaaggcggcgctgacc
ggcggcgctccggcggaaggcaagccgatcctgctgggcatcaccaaggcctcgctgcag
acgcgctcgttcatctcggcggcgtcgttccaggagacgacccgcgtcctcaccgaggct
tcggtgcagggcaagatcgacacgctgaacggcctcaaggagaatgtgatcgtcggccgt
ctcatccccgccggcaccggcgcgggcatgaaccggctgcgcgtcaccgcgacgtcgcgc
gacgcggcgctgcgcgcctcgcaccgcggcctcgccgcctcgctggtggcgccggagagt
gcggccgaggagcatgccgccgagctcgcgcgcaccccgcgtgactcgaccggcaccggc
agcgatccgctggccgaggtcgtggcgaccggccacggcaccgatgccgatgcgggcgac
tatctgaacagctga
DBGET
integrated database retrieval system
