Sphingomonas nostoxanthinifaciens: K8P63_02520
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Entry
K8P63_02520 CDS
T08862
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
snos
Sphingomonas nostoxanthinifaciens
Brite
KEGG Orthology (KO) [BR:
snos00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
snos03032
]
K8P63_02520 (topA)
03400 DNA repair and recombination proteins [BR:
snos03400
]
K8P63_02520 (topA)
Enzymes [BR:
snos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
K8P63_02520 (topA)
DNA replication proteins [BR:
snos03032
]
Prokaryotic type
DNA Topoisomerases
K8P63_02520 (topA)
DNA repair and recombination proteins [BR:
snos03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
K8P63_02520 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
DUF7343
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
UAK25104
LinkDB
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Position
556301..558874
Genome browser
AA seq
857 aa
AA seq
DB search
MKLVVVESPAKAKTIEKYLGPGHRVLASYGHVRDLPPKDGSVNPDDGFAMEWEPYADKAK
QLKAIADEAKTADSLILATDPDREGEAISWHVQEVLRKKKALPKHVERVTFNAITKPAVL
EAMANPRALDEDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLVVDRE
REIELFRAQEYWSVAAAMEQDGVPFLARLVRWRGNKIDRLTIGNGGDAEKARTDVEAGRF
SVVSVETKPLTRNPPPPFTTSTIQQEAARKLGFSASHTMRVAQDLYEQGAITYMRTDGVQ
MDGSAISAARAAIVDRYDGGYVPEKPRQYTAKAKNAQEAHEAIRPTEFTRDKVGSGDHAR
LYDLVWKRALASQMASARLERTTVEMEDGTGQHGLRATGQVVLFPGYLALYEEGRDDAED
EDAKRLPRMSEGDAPAKKAVTAEQHFTQPPPRYSEASLVKKMEELGIGRPSTYAATLQTL
KDRDYVVLEKNRFIPQESGRLLTSFLERFFEKYVSYDFTAGLEEELDDVSGGRAQWQAVL
DAFWRDFKPKTAEVMEQKPSEVTAALDEFLAPYLFPDKGDGTDPRACPSCGNGKLALRGG
KYGAFVACSNYPDCKFTRRFAQGGGEAAEADTGPAEMGTDPVSGELVTRRSGRFGPYIQL
GDGKDAKRASIPKDVPELDLPMALKLLSLPREVGVHPESAKPITASIGRYGPYLAHDGKY
ARLASTAEVFETGMNAAVAKLADAANGGARARGASREPIATLGDSPVTGKPVKVMEGRFG
PYVTDGETNATLPKGTDPATLAAEAALTLLAERAAKGPPKGKKKPARKAPAKAAAKKAPA
KKVAAKGAAAKGAAAEK
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcgtcgtcgtcgaatctccggccaaggccaagaccatcgagaagtatctcgga
ccgggccatcgcgtgctcgcttcctacggtcacgtccgcgatctgccgcccaaggacggg
tcggtgaatccggatgacggcttcgcgatggagtgggagccttatgccgacaaggccaag
cagctcaaggcgatcgccgacgaggcgaagaccgcggactcgctgattctcgcgaccgat
cccgatcgcgagggcgaggcgatttcgtggcacgtccaggaggtcttgcggaagaagaag
gcgctgccgaagcacgtcgagcgcgtcaccttcaacgcgatcaccaagccggcggtgctg
gaggcgatggccaatccgcgcgcgctcgacgaggatctgatcgacgcctatcgggcgcgc
cgcgcgctcgattatctggtcggtttcacgctctcgccggtgctgtggcgcaaattgccc
ggcgccaagtccgccgggcgcgtccagtcggtcgcgctgcggctggtggtcgatcgcgag
cgcgagatcgagctgttccgcgcgcaggaatattggtctgtcgcggccgcgatggagcag
gacggcgtgccgttcctcgcgcggctggtgcggtggcgcggcaacaagatcgatcgcctc
acgatcggcaatggcggcgatgccgaaaaggcgcgtacggacgtcgaggcggggcgcttc
tcggtcgtctcggtcgagaccaagccgctcacccgcaatccgccgccgcccttcaccacc
tcgaccatccagcaggaggcggcgcgcaagctcggcttctcggccagccacacgatgcgc
gtggcgcaggatctctacgagcagggcgcgatcacctacatgcggaccgacggcgtgcag
atggacggcagcgccatctccgccgcgcgcgccgcgatcgtcgatcgctacgacggcggc
tacgttcctgaaaagccgcgccaatatacagctaaggccaagaatgcgcaggaagcgcac
gaggcgatccgtccgaccgagttcacccgtgacaaggtcggttcgggcgaccatgcccgc
ctgtacgatctcgtgtggaagcgcgcgctcgccagccagatggcgtcggcgcggctggag
cgcacgacggtcgagatggaagacggcaccggccagcatgggttgcgcgcgaccgggcag
gtcgtgctgttccccggctatctcgcgctctacgaagagggccgcgacgatgcggaggac
gaggacgccaagcgcctgccgcgcatgagcgagggcgacgcccccgccaagaaggcggtg
accgccgagcagcatttcacccagccgccgccgcgttattcggaagccagcctcgtcaag
aagatggaggagctcggcatcggccgcccctccacctatgccgcgacgctgcagacgctg
aaggaccgcgactatgtcgtgctggagaagaaccgcttcatcccgcaggaaagcggccgg
ttgctgaccagcttcctcgagcgcttcttcgagaaatacgtctcctacgatttcaccgcc
gggctggaggaggagctggacgacgtgtccggcggccgcgcccagtggcaggcggtgctc
gacgccttctggcgcgacttcaagccgaagaccgccgaggtgatggagcagaagccgtcc
gaggtgaccgcggcgctcgacgagttccttgcgccctatctgtttcccgacaagggcgac
ggcaccgatccgcgcgcctgcccgtcgtgcggtaacggcaagctggcgctgcgcggcggc
aaatatggcgcgttcgtcgcctgctccaactatcccgactgcaagttcacgcgccgcttc
gcgcagggcggcggcgaggcggccgaggctgataccggccccgccgaaatgggcaccgat
cccgtttccggcgagctggtgacgcgccgctcgggacggttcgggccgtatatccagctg
ggcgacggcaaggacgccaagcgcgcctcgatccccaaggacgtgcccgagctcgatctg
ccgatggcgctgaaattgctgtcgctgccgcgcgaggtgggcgtccaccccgaaagcgcc
aagccgatcaccgcctcgatcggccgctacgggccgtatcttgcgcatgacggcaaatat
gcgcggctggcctcgaccgccgaggtattcgagaccggcatgaacgccgcggtggcgaag
ctcgccgacgcggccaacggcggcgcccgcgcccgcggggcctcgcgcgagccgatcgcg
actttgggggacagcccggtcacgggcaagccggtgaaggtgatggagggccggttcggc
ccctatgtcaccgacggcgagaccaacgcgaccctccccaagggcaccgaccccgccacg
ctggctgccgaggcggcgctgaccctgctggccgaacgcgccgcgaaggggccgcccaag
ggcaagaagaagcccgcgcgcaaggcaccggcgaaggccgcggccaagaaggcgccggcg
aagaaggtggcagccaagggggcggcggcaaagggtgcagcggccgagaagtaa
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