Sphingomonas nostoxanthinifaciens: K8P63_20330
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Entry
K8P63_20330 CDS
T08862
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
snos
Sphingomonas nostoxanthinifaciens
Pathway
snos02020
Two-component system
snos02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
snos00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
K8P63_20330 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
K8P63_20330 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snos03021
]
K8P63_20330 (rpoN)
Transcription machinery [BR:
snos03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
K8P63_20330 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_38
HTH_3
HTH_Crp_2
HTH_23
Sigma70_r4
Phage_CII
Motif
Other DBs
NCBI-ProteinID:
UAK24613
LinkDB
All DBs
Position
4249577..4251055
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AA seq
492 aa
AA seq
DB search
MSLAPRLDLRQAQSLVMTPQLQQAIKLLALSNLELEGFLAEELEQNPLLATGSDEPGATA
SDATVAEAAPAAPTGETATADELVRAGDAAADAPLDIDYDGETFHQDSAADRAGSGLDLS
DGAAAGERPDFDSIAADAPNLADHLLQQAGEMLDGRDLMIARHIVDLIDDAGYVVGLDEL
AARLDVADAAIERVLTVIQGFDPTGVGARSLAECIALQAREADRYDPAMACMIDHLDLLA
RGQIAQLRRMCDVDEEDFADMVRELRGYDPKPGLRYGGERAAPIVPDLFVTRTRAGWAIE
LNHATLPRLLIDRRYHAELVAGADDKAGKAWLADRLASANWLIKALDQRQRTIVRVATEL
VKQQEGFFRNGVAHLKPMTLRAVADAIGMHESTVSRVTSNKYLACDRGLYELKYFFSSGV
PSGDGEAASAEAVKSHIGRMIAGEGQDVLSDDKLVDLLKAKGFDIARRTVAKYREAMGLG
SSVQRRRKKALE
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcgcgccgcgcctcgatctgcgccaggcgcagtcgctggtgatgacgccgcag
ctgcagcaggcgatcaagctgctcgcgctgtccaacctcgagctcgaagggttcctcgcc
gaggagctcgagcagaacccccttctcgccaccggatcggacgagcccggcgcgaccgca
tcggacgccaccgtcgccgaggcggcacccgccgccccgacgggcgaaaccgccaccgcc
gacgagctggtgcgcgcgggcgatgccgccgccgacgcaccgctcgacatcgattatgac
ggcgaaaccttccatcaggacagcgccgccgaccgcgccggcagcgggctcgatctgtcg
gacggcgcggccgcgggcgagcggcccgatttcgacagcatcgccgccgacgcgccgaac
ctcgccgaccatctgttgcagcaggcaggcgagatgctggacggccgcgacctgatgatc
gcgcgccacatcgtcgatctgatcgacgatgccggctacgtcgtcgggctggacgaactg
gcggcgcggctggacgtcgcggatgcagcgatcgagcgcgtgctgaccgtcattcagggg
tttgaccccaccggcgtcggcgcacgctcgctcgccgaatgcatcgcgctgcaggcgcgc
gaggcggatcgctacgacccggcgatggcgtgcatgatcgaccatctcgacctgctcgcg
cgcggccagatcgcgcagctccgccggatgtgcgacgtcgacgaggaggatttcgccgac
atggtgcgcgagctgcgcggctacgatcccaagcccggcctgcgctatggcggcgagcgc
gccgcgccgatcgtgcccgacctcttcgtcacgcgcacgcgtgccggctgggcgatcgag
ctgaaccacgcgacgctgccgcgcctgctgatcgaccgacgctatcacgccgagttggtg
gccggcgccgacgacaaggccggcaaggcgtggctggcggatcgcctcgccagcgccaac
tggctgatcaaggcgctcgaccagcgccagcgcaccatcgtccgcgtcgcgaccgagctg
gtgaagcagcaggaaggcttcttccgcaacggcgtcgcgcacctgaagccgatgacgctg
cgcgccgtcgccgacgcgatcggcatgcacgaatcgaccgtcagccgggttacgtcgaac
aaatatctcgcctgcgaccgcggcctctacgagctcaaatatttcttctccagcggcgtg
ccgtcgggcgacggcgaagcggcgtcggccgaggcggtgaagagccacatcggccggatg
atcgccggcgaaggccaggacgtgttgtccgatgacaaattggtcgatctgctgaaggcc
aagggcttcgacatcgcgcgccgcaccgtcgcaaaatatcgcgaggcgatggggctcggc
tcgtccgtgcaacggcgacgtaagaaggcattggaatga
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