Streptomyces nodosus: CP978_09645
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Entry
CP978_09645 CDS
T06839
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
snq
Streptomyces nodosus
Brite
KEGG Orthology (KO) [BR:
snq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snq03019
]
CP978_09645 (hrpB)
Enzymes [BR:
snq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CP978_09645 (hrpB)
Messenger RNA biogenesis [BR:
snq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CP978_09645 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_25
AAA_22
AAA_19
AAA_30
nSTAND3
HA2_N
AAA_11
ResIII
Helicase_RecD
AAA
Motif
Other DBs
NCBI-ProteinID:
QEV38786
UniProt:
A0A0B5DIF6
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All DBs
Position
2111310..2113853
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AA seq
847 aa
AA seq
DB search
MIRHDALDRLPVRSALPALRDALDAHGVAVLCAPPGTGKTTLVPLVLAGLVGGGPARRVV
VAEPRRIAARAAARRMAWLLGERPGESVGHTVRGERVRGPRTRVEVVTTGVLLQRLQRDQ
ELAGVDVVVLDECHERHLDADTAAAFLLDVRAALRPELRLVAASATTDAEGWARLLGGAP
VVEAEGVSHPVEVVWAPPPGPRAGGAPTRPVRPPHGMRVDPALLSHVASVVRRALAECAG
DVLCFLPGVGEIARVAAQLRDLGGGVEVLQVHGRAPAAVQDAVLSAGTGRRVVLATAVAE
SSLTVPGVRAVVDSGLAREPRVDHARGLSALTTVRASQATGRQRAGRAGREAPGRVYRCW
SEAEDGRLPRFPAPEIKLADLTAFALGTACWGDPDASGLALLDAPPAGAMAAARSVLTAI
DAVDTAGRATERGTRMSRLGLHPRLARALLDAAPEIGVDRAAEVVALLSEEPPREYGDDL
SAAWRTARRGGDAYAARWREETRRLRAAAGEAGSAGADRAAGAQDDQVVGLVAALAFPER
LARSDGGSFLMVNGTRAEPADGSRLRGAPWLAVAVADRPVGSVHARVRLAAVVDEDVARR
ASAALHTVREEVHWADGEVVAREVERLGAVELTVRPLREPAPAPVREALLEGLREDGLEL
LRWSPDARLLRRRLAFLRLHLGEPWPDVSDEALHARPDDWLEPELSRARRRADLARIDAG
EALARLLPWSTGDAARLDELAPERITVPSGSRIRIDYEDPERPVLAVKLQELFGLQRSPT
VAGVPLLVHLLSPAGRPAAVTADLASFWRDGYRAVRAELRGRYPKHPWPEDPAGAEPTRH
TNARLRR
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
gtgatccgccatgacgccctcgaccgcctccccgtccgttccgcgcttcccgcgctccgg
gacgcgctggacgcacacggtgtcgcggtgctgtgcgcgccgcccggtaccggtaagacc
accctggtgccgctggtcctcgccgggctggtgggcggcggaccggcgcgccgtgtggtg
gtcgccgagccccggcggatcgccgcacgggccgcggcgcggcggatggcctggctgctc
ggggagaggcccggcgagagcgtcgggcacaccgtgcgaggggagcgggtgagggggccg
cgcacccgtgtggaggtcgtcacgaccggggtgctgctccagcggttgcagcgggaccag
gagctggcgggcgtcgacgtggtcgtgctcgacgagtgccacgaacggcatctggacgcc
gatacggccgccgccttcctgctcgacgtacgggcggccctgcgcccggagctgcggctg
gtggcggcctccgcgacgacggacgcggagggctgggcccgcctgctgggcggggcaccg
gtggtcgaggcggagggcgtgtcccatcccgtcgaggtggtgtgggcgcctcccccggga
ccgcgcgccggaggggccccgacgcgtcccgtccggcccccgcacgggatgcgcgtggac
ccggcgctgctgagccatgtggcgtcggtggtgcggcgggcgctcgccgagtgcgcgggg
gacgtgctgtgtttcctgcccggtgtcggggagatcgcacgcgtggccgcgcagctgagg
gacctgggcggcggggtcgaggtgcttcaggtgcacggacgggccccggcggccgtgcag
gacgcggtgctgtccgccggcaccgggcgccgggtggtcctggcgacggccgtggcggag
tcgtcgctgaccgtgcccggggtgcgggcggtcgtcgactccggtcttgcgcgggagccg
cgggtcgaccatgcgcgcgggctgagcgccctgacgacggtacgggcctcgcaggccacc
gggcggcagcgcgcgggccgggcgggacgtgaggctccgggacgggtgtaccgctgctgg
tccgaggcggaggacgggcggctgccccgcttcccggcgccggagatcaagctggccgat
ctgacggccttcgccctggggaccgcgtgctggggagacccggacgcctccggcctcgcc
ctcctggacgcaccgccggcgggggcgatggcggcggcacggtcggtactgacggcgatc
gacgcggtggacacggcgggacgggccacggaacgcggcacccggatgtcccggctcggc
ctgcatccccggctggcccgggccctgctggacgcggcccccgagatcggtgtcgaccgt
gccgccgaggtggtcgccctgctgagcgaggagcccccgcgggagtacggggacgatctg
tcggcggcatggcggacggcccggcgcgggggcgacgcctatgcggcccgctggcgggag
gagacacggcggctgcgggcggcggcaggcgaggcgggctccgccggcgcggacagggcg
gcgggggcacaggacgatcaggtggtggggctggtcgcggccctcgccttccccgagcgg
ctcgcacggtccgacggcggctccttcctgatggtgaacggcacccgcgccgaaccggcg
gacgggtcgaggctgcgcggcgccccctggctcgccgtcgccgtcgccgaccggcccgtc
ggatcggtgcacgcccgggtgcggctcgccgccgtcgtggacgaggacgtggcgcgccgg
gcctccgccgcgctgcacaccgtgcgggaggaggtccactgggccgacggggaggtcgtc
gcccgtgaggtcgaacggctcggggccgtggagctgacggtgcggccgttgcgggagccc
gcgcccgccccggtacgggaagcccttctggaggggctgcgggaggacgggctcgaactg
ctgcgctggtcccccgacgcccgtctgctgcgccgaaggctcgcctttctgcggctgcat
ctgggggagccctggccggacgtctcggacgaggcgctgcacgcacgccccgacgactgg
ctggagccggagctgagccgggcccggcggcgggccgatctcgcgcggatcgacgccggg
gaggccctagcccggctgctgccctggtccaccggcgacgcggcccggctggacgagctc
gcccccgagcggatcaccgtgccgagcggctccaggatccggatcgactacgaggacccc
gagcgtcccgtgctcgcggtgaaactccaggagttgttcgggctccagaggtcacccacg
gtcgccggtgtgccgctcctggtgcatctgctctcccccgccgggcggcccgccgccgtc
accgccgacctcgcctccttctggagggacggctaccgggcggtacgggcggagctgcgg
ggccgctatcccaagcacccgtggcccgaggacccggcgggtgcggagccgacccggcac
accaacgcccggctcaggcgctga
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