Streptomyces nodosus: CP978_12130
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Entry
CP978_12130 CDS
T06839
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
snq
Streptomyces nodosus
Pathway
snq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CP978_12130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snq03019
]
CP978_12130
03009 Ribosome biogenesis [BR:
snq03009
]
CP978_12130
Enzymes [BR:
snq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CP978_12130
Messenger RNA biogenesis [BR:
snq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CP978_12130
Ribosome biogenesis [BR:
snq03009
]
Prokaryotic type
rRNA processing factors
CP978_12130
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QEV39214
UniProt:
A0A5P2W004
LinkDB
All DBs
Position
complement(2672331..2676257)
Genome browser
AA seq
1308 aa
AA seq
DB search
MLEPIEPAQGSEYNTPSDTLPPRRRRRAASRPAGPPAATTEATATDAVTTEDTADETVTG
TAAAEKPAAETAPAAEAVVAPGDEETEETVAEAAVPEEARTTAESVVEEPAPRRTRRRAT
RRVSAPAGAPETTETAEVVVPAVPETEAVAPVTAEAVVSEVVEASEPAAEEAAPRRARRR
ATRRVSAPAGAPETAEAPVSEPVEPAPTAEEIPAAEETATRRTRRRATRRVTAPAGVPAA
ETTETPEEAPVSAVTEAAEAPAPAAAVVAARKETEPVAEEAAPRRSRRRAVRKAAGGFSE
PTHRPAEEAGDSARRPVRPAVAVFKAPVFTEPMFQTPERAAAAAAAEAAEQETAEEESTA
PRRRRRRTGEEEAAAETPGTTEVEETTEEPEESAEGEEADDSEETGSRRRRRRGGRRRRR
GESPDAEESEESEEADEQAAQDAEDTAEQIDEDAEDTAHHEDEDSGSSSSSSRRRRRRRR
RAGDTGTEAESASDDPERTVVKVREPRKKDERPGDGTDEVQSIKGSTRLEAKKQRRREGR
EQGRRRVPIITEAEFLARREAVERVMVVRQSGERTQIGVLEDDVLVEHYVNKEQATSYVG
NVYLGKVQNVLPSMEAAFIDIGKGRNAVLYAGEVNFEALGMANGPRRIESALKSGQSVLV
QVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTILKKIVPEDA
GVIVRTAAEGASEDELRRDVERLQSQWEEIRKKSKNGGNAPTLLYGEPDMTVRVVRDIFN
EDFSKVIVSGDEAWGTIHGYVSHVAPDLAERLQRWTSEVDVFATYRIDEQLAKALDRKVW
LPSGGSLVIDRTEAMVVIDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGII
VIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSET
CVHCNGRGVIVHLDHMAGATGGGKRKKRGRGGAEHEPETHEVAAEAAETTPAPAVVETEA
AAAAEVTAPVALPEPAFAPDEELYSSIAEAEAAASRGRTRRRATRRASAPAGAPRSEERA
PRSRRSERAAQSRQSAEPVAAEDPVVPVEPVPAADPVVEAPSAPAEEEAAPKGRTRRRAT
RKVSAPAATPAEAVVTVVEPEPQPAAPRAEAEPLSEPVAEPSEAPAEDAAPARPRRRAVR
KATAPTSSEETAVVVVPAAEAEAQEPVASAADDAEASAPAKKAARKTAKKATAKKAATKK
TTAKKTAAKKTAAKKTTAKKAAVKKTAAKKTAAAEQTPLPSVSATTEG
NT seq
3927 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaaccgatcgagcccgcacagggttccgaatacaacacccccagcgacactctg
ccgccgcgtcgccgacgccgcgccgcatcgcggccggcgggaccgccggccgccaccacc
gaggccacggccaccgatgccgtgaccaccgaggacacggccgacgagaccgtgaccggt
acggcggcggccgaaaagccggccgcggagaccgcgccggctgccgaggccgtggtggcc
cctggggacgaagagaccgaggagacggtggccgaggccgctgttcccgaagaagcgagg
acgacggccgagtccgtcgtcgaggagcccgctccgcgtcgtacgcgtcgtcgtgccacg
cgtcgggtgtcggcgcccgccggggcgcccgagaccacggagacggccgaggtcgtggtt
ccggcggttcccgagacggaggccgtggcgccggtgaccgccgaggccgttgtctccgag
gtggtggaggcgtccgagcctgccgccgaggaggccgccccgcgtcgtgcgcgtcgtcgt
gccacgcgtcgggtgtcggcgcccgccggggcgcccgagaccgccgaggccccggtgagt
gagccggtcgagccggcccccacggccgaggagatccccgccgccgaggagacggccacc
cgccgcacccgtcgccgggccacccgccgggtgaccgctccggccggtgtacccgcagcc
gagaccaccgagactcccgaggaggcgcctgtgagcgccgtcaccgaggccgccgaggcc
ccggcccccgccgcggccgtcgtcgcggcgcgcaaggagaccgagccggtcgccgaggag
gccgccccgcgccgcagccgccgtcgtgcggtccgcaaggccgccggtggcttctccgag
cccacgcaccggcccgccgaggaggccggcgactccgcgcgacggcccgtgcggcccgcg
gtcgccgtgttcaaggcgccggtgttcaccgagccgatgttccagaccccggagcgggcc
gccgctgccgctgccgccgaggccgcggagcaggagaccgccgaggaggagagcaccgcg
ccgcgccgccgtcgtcgccgcaccggcgaggaggaggccgccgccgagacgcccgggacc
accgaggtggaggagaccaccgaggaaccggaggagtccgccgagggcgaggaggccgac
gactcggaggagaccggttcgcgccgtcgccgtcgccgcggtggccgtcgccgccgtcgt
ggggagtccccggacgccgaggagagcgaggagtccgaggaggccgacgagcaggccgcc
caggacgccgaggacaccgcggagcagatcgacgaggacgcggaggacacggcccaccac
gaggacgaggactcggggtcgtcttcctccagcagccgtcgccgccgccgtcgccgccgt
cgggccggtgacacgggtaccgaggccgagtcggcgtccgacgacccggagcgcaccgtc
gtcaaggtccgcgagccccgcaagaaggacgagcggcccggtgacggcaccgacgaggtg
cagtccatcaagggctccacgcgtctggaggccaagaagcagcgccgccgtgaggggcgc
gagcagggccgccgccgcgtcccgatcatcaccgaggccgagttcctggcccgtcgggag
gccgtcgagcgtgtgatggtcgtccgccagagcggcgagcgcacccagatcggcgtcctg
gaggacgacgtgctcgtcgagcactacgtcaacaaggaacaggcgacgtcgtacgtcggc
aatgtctacctgggcaaggtgcagaacgtcctgccctcgatggaggccgccttcatcgac
atcggcaagggccgcaacgccgtcctgtacgcgggcgaggtcaacttcgaggcgctcggg
atggccaacggcccgcgccgcatcgagtccgcgctgaagtccgggcagtccgtgctggtg
caggtcaccaaggacccgatcggccacaagggcgcccggctgaccagccaggtctccctg
ccgggccgttatctggtctatgtgcccgagggctcgatgaccggcatcagccgcaagctg
cccgacaccgagcgggcccggctgaagaccatcctcaagaagatcgtccccgaggacgcg
ggcgtcatcgtgcgcaccgccgccgagggcgcgagcgaggacgaactgcgcagggacgtc
gagcggctccagtcgcagtgggaggagatccggaagaagtcgaagaacggcggcaacgcg
ccgacgctgctgtacggcgagccggacatgaccgtccgggtcgtgcgcgacatcttcaac
gaggacttctccaaggtcatcgtcagcggtgacgaggcgtgggggaccatccacggatac
gtctcccatgtcgcccccgatctggccgagcgcctgcagcggtggacctccgaggtcgat
gtcttcgccacgtaccggatcgacgagcagctcgccaaggcgctggaccgcaaggtctgg
ctgcccagcggcggttcgctggtgatcgaccgcaccgaggcgatggtcgtcatcgacgtc
aacaccggcaagttcaccggtcagggcggcaacctcgaggagaccgtcaccaggaacaac
ctggaggcggccgaggagatcgtccgtcagctgcggctgcgcgacctcggcggcatcatc
gtcatcgacttcatcgacatggtgctggagtccaaccgggacctggtgctgcggcgtctg
ctggagtgcctgggccgggaccgcaccaagcaccaggtcgccgaggtgacctcgctgggc
ctggtccagatgacgcgcaagcgcgtggggcagggcctgctggagtccttctccgagacc
tgcgtccactgcaacggccgtggtgtgatcgtgcacctggaccacatggccggcgccacc
ggcggcggcaagcgcaagaagcgcggccggggcggtgccgagcacgagccggagacgcac
gaggtggccgccgaggccgcggagaccaccccggcaccggccgtcgtggagaccgaggcc
gccgctgccgccgaggtcacggccccggtggcgcttccggagcccgcgttcgcgcccgac
gaggagctgtacagcagcatcgccgaggccgaggcggccgcttcccgcggccgtacgcgg
cgccgggccacccggcgggcctcggctccggcgggtgcgccgcggagcgaggagcgggca
ccgaggtcccgtaggagcgagcgcgccgctcagtcgcgtcagagcgcggagccggtggcc
gccgaggacccggtcgtccccgtggagccggtgcctgccgccgacccggttgtcgaggcg
ccgtccgcgccggccgaggaggaggccgcgcccaagggccgtacgcgccgtcgtgcgacc
cgcaaggtgtcggcaccggccgccacgcccgcggaggccgtggtgacggtcgtcgagccc
gagccgcagccggccgcgccgcgggccgaggccgagccgttgtccgagccggtcgccgag
ccgtccgaggctcccgccgaggatgccgcccccgcccgcccgcgccgccgtgcggtgcgc
aaggccacggcgcccacctcgtccgaggagaccgccgtggtggtcgtcccggcggccgag
gcggaggcccaggagccggtggcgtccgcggcggacgacgccgaggcgtcggcgcccgcc
aagaaggcggcccgcaagaccgccaagaaggcgacggcgaagaaggccgccaccaagaag
acgacggccaagaagaccgccgccaagaagaccgccgcgaagaagacgaccgccaagaag
gccgcggtcaagaagacggcggcgaagaagacggcggcggcggagcagacgcccctgccg
tccgtctcggcgacgacggagggctga
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