Streptomyces nodosus: CP978_19335
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Entry
CP978_19335 CDS
T06839
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
snq
Streptomyces nodosus
Brite
KEGG Orthology (KO) [BR:
snq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
snq03016
]
CP978_19335
Enzymes [BR:
snq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CP978_19335
Transfer RNA biogenesis [BR:
snq03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CP978_19335
Prokaryotic type
tRNA splicing ligases
CP978_19335
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QEV40416
UniProt:
A0A0B5DL33
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Position
4282750..4283943
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AA seq
397 aa
AA seq
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MSYVEVPGAKVPIRMWTDPAGVEDVAMRQLRNVATLPWIEGLAVMPDVHYGKGATVGSVI
AMRDAVCPAAVGVDIGCGMSAVRTSLTADDLPGDLSRLRSAIERAIPVGRGMHDDPVDPG
RFHGMPTSGWDDFWGRFDSVADAVKFRAERATRQMGTLGSGNHFVEVCVDTEGAVWLMLH
SGSRNIGKELAEHHIGVAQRLPHNQGLIDRDLAVFVAGTPQMAAYRNDLYWAQEYARYNR
TLMMALLKDVIRKEFRKAKPAFEREISCHHNYVSEERYEGMDLLVTRKGAIRAGAGDYGI
IPGSMGTGSYIVKGLGNEKAFNSASHGAGRRMSRSAAKRRFTAKDLEEQTRGVECRKDSG
VVDEIPGAYKPIRQVIDQQRDLVEVVAELKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcatatgtagaggtgccgggggcgaaggtcccgatccgtatgtggacggacccggcg
ggcgtcgaggacgtcgcgatgcggcagttgcggaacgtcgcgacgctgccgtggatcgag
ggcctcgcggtcatgccggacgtgcactacggcaagggggcgaccgtcggctcggtcatc
gccatgcgggacgcggtgtgcccggcggcggtgggggtggacatcggctgcgggatgtcg
gcggtgcggacgtcgctcacggccgacgacctgccgggggatctgtcccggctgcggtcc
gcgatcgagcgggccatcccggtcgggcgggggatgcacgacgatccggtcgaccccggc
cgcttccacggcatgcccacctcaggatgggacgacttctgggggcggttcgactcggtg
gccgacgcggtgaagttccgcgcggagcgtgcgaccaggcagatgggcacgctcggttcg
ggcaatcacttcgtggaggtgtgcgtggacaccgagggggcggtgtggctgatgctgcac
tccggctcccgcaacatcggcaaggaactcgccgagcaccacatcggcgtggcgcagcgg
ctcccgcacaaccaggggctgatcgaccgtgacctcgccgtcttcgtcgcgggcacaccg
cagatggcggcgtaccgcaacgacctgtactgggcgcaggagtacgcccggtacaaccgc
acgctgatgatggccctgctgaaggacgtgatccgcaaggagttcagaaaggcgaagccg
gccttcgagcgggagatctcctgccatcacaactatgtgtccgaggagcggtacgagggc
atggatctgctggtgacccgcaagggcgcgatccgggcgggtgccggcgactacgggatc
atcccgggctcgatgggcaccggctcgtacatcgtgaagggcctcggcaacgagaaggcg
ttcaactcggcctcgcacggcgcgggccgccggatgagccgcagcgcggccaagcgccgc
ttcaccgcgaaggacctggaggagcagacccggggcgtggagtgccgcaaggattcgggg
gtcgtggacgagatcccgggtgcctacaagccgatccggcaggtcatcgaccagcagcgc
gacctggtcgaggtcgtggccgaactcaagcaggtcgtctgtgtgaagggctga
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