Streptomyces nodosus: CP978_25605
Help
Entry
CP978_25605 CDS
T06839
Name
(GenBank) type IV secretion protein Rhs
Organism
snq
Streptomyces nodosus
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RHS_repeat
TEN_YD-shell
DUF6531
Endonuclea_NS_2
WXG100_2
RHS
Endonuclease_NS
Beta-prop_THOC3
OCRE
Motif
Other DBs
NCBI-ProteinID:
QEV41484
LinkDB
All DBs
Position
complement(5701868..5706610)
Genome browser
AA seq
1580 aa
AA seq
DB search
MGYTVPGWLDEILDFIGINFPNVDEDDYREMAASMREFADNFEGKSGDAHQAVARILSSS
QGWAVDAMQKHWSHVKAGHLDKIPELARLFAEACDVVADVIYGMKIKAEIELGAMAASVG
ISLGLAAFTGGLSALLGAAEITAMRQAVKRIVDEAADRIVDELVARVTEPVNAKLEKMVE
DAVLDLADGAFSLPPEPDAGGGGGSGKHGHGGMQLASAGGGAMMLASAGGGPGRGVDLFI
DHVEFEDGADKVSRHGGDLHSAVTDPLERAKGHFGRTKGKDAFTAPFESVLEGALKGSEK
AVKKVVKHIAENVPDRVKATSRLHKGNDIDAGRRANSVHVNSSKSGERSGGHHGTPSSGR
KPDPGLKIDSSKLSRQARELDAKQLCGDPIDMSSGQMVLAQKDVALPGVLPLKLHRAHLS
GYEAGRFFGPSWASTLDERIQQDDALGGYWWYREDGSALAYPRMPDLPGDRVGPAEGVRL
PLTYVSRGSGYVLTVEDPHSGLTRQFEAGRAQGGPWWLVGVEDRNGNHVSVERDDNGVPL
TVTHGGGYRIRVDHDDQQRITALWALTDDDPVRLRTFCYDAETGNLGEVRNAVDAPTRFT
YDSAHRVTGWRDSNDTEFAYVYDAGGRVIETRGTDGVLNSRLTYGERQDDGTSTATYTDS
LGDTTIYRANRRGQIVAITDPLGHTITQTWDHHDQLLSRTDPLGRTTRWTWDDAGALVSV
TAPDGTSSHVTYNALHLPVRITDPQGAAYVQDFDARGNCTALTGPDGSVRLFTHHSTGAV
AVISGPAGDTLRIDTDPAGLATVVEDAQGNRTRYLRDALGRPARITDPVGATTTLVWDAE
GRLRERTAANGATESWSYDGEGNCTDHTDAVGGRTRLVHGPFDLLVARISPDGVEHRFRY
DTERRLTEVLNPQGAVWKYVYDAAGQLVKETDFDGHETTYRYDATGDLTARTNAAGQTVE
YHYDASGQLIEKVVDDRRTVFRNDACGRLVSAAGPDGTLAYAYDAVGRVIAETIDGRTLT
TDCDASGRRTLRRTPGGVETTYSYDTAGRYAELSLSGRTLSFEHDAAGREVLRHLGDRFT
LAFTWHPVGSLSGQTLTVHDTAQPSIQRSYTYRHDGLLTGITDRDAGRRSFLLDRAGRVS
AVEAGRWSESYAYDETGNQTRATWPEKHPGSQARGTRSYAGTRLISAGNVRYEHDAAGRC
VLRQVKHLSRKPDTWRYTWDAEDRLVSVVTPDAICWRYLYDPLGRRIAKQRLSANGAVTE
ETRFVWDGSTLVEQTTGVSGAAELVTLTWDHDGQAPVTQTETKSLADAPQDIIDQRFFAI
VTDQIGTPTELVDEEGRIAWRTRTTLWGSTTWNHDATAYTPLRFPGQYYDPETGLHHNYF
RHYDPETARYLTSDPLGLDPAPNSFAYVDNPHTLSDPLGLTPCDENDVTWGGRVRYGAPG
PGGRTTTMRATIESDMTGGKTDPRVNVPGYQKYKKLNKTHLLGAQIGGSNRDPRNFVTMH
RFANSPVMRKIEDQIREAVDKHGETIEYTVTPVYRTNNPADVIPLGLTVEARGNKGFTFT
PYEGGSSTNIVTILNVPKRI
NT seq
4743 nt
NT seq
+upstream
nt +downstream
nt
atgggttacacagtcccgggttggctggacgagatactcgacttcatcgggatcaacttc
ccgaacgtggacgaggacgactaccgcgaaatggccgcgtccatgcgggagttcgccgac
aatttcgagggcaagagcggcgacgcccaccaggcggtagcccggatcctgtcctcctcg
cagggctgggccgtcgatgcgatgcagaagcactggtcgcacgtgaaggctgggcatctc
gacaagatcccggagctggcgcggctgttcgcggaggcgtgcgatgtcgtcgcggacgtc
atctacggcatgaagatcaaggccgagatcgaactcggtgcgatggccgcctcggtgggt
atctccctgggcctcgccgcgttcaccggcggcctgtcggcgctgctgggcgctgccgag
atcacggcgatgcggcaggcggtgaagcggatcgtcgacgaggccgccgaccgcatcgtg
gacgagctggtggcccgagtgaccgaaccggtcaacgccaagctggagaagatggtcgag
gacgcagtcctggacctggccgatggcgcgttctcgctaccccccgagccggacgcaggt
ggcggtggtggctccggcaagcacggccacggcggcatgcagctggcctcggccggaggc
ggggccatgatgctcgcgtccgccggtggaggcccgggccgcggggtggacctgttcatc
gaccatgtcgagttcgaggacggcgccgacaaggtctcccggcacggcggtgacttgcac
agcgccgtcaccgacccgctggagcgggccaaaggccacttcggccgcaccaagggcaag
gacgccttcaccgcgcccttcgagtcggtgctggaaggcgccctcaagggctcggagaag
gccgtcaagaaagtcgtcaagcatatcgccgagaatgtcccggaccgtgtgaaggccacc
tcccgtctacacaagggcaacgacatcgacgccggccgccgggccaacagcgtccacgtc
aattccagcaagtcaggcgaacgttcaggcggccaccacggcaccccctcgtccggccgc
aagcccgaccccggcctgaagatcgactcgtcgaaactttcccggcaggcccgtgagctg
gacgccaagcagctgtgcggcgacccgatcgacatgtccagcggccagatggtgcttgcc
cagaaggatgtggcgttgccgggtgtcctgcccctgaaactgcaccgcgcccatctctcc
ggctacgaagcaggccgcttcttcggcccgtcctgggcctccaccctcgacgaacggatc
cagcaggacgacgctctgggcggatactggtggtaccgggaggacgggtccgcactcgcc
tatccgcgtatgcccgacctgcccggcgaccgggtggggcccgccgagggcgtccgtctc
ccgctgacctatgtgagccgcggcagcggttacgtcctgacggtggaggatccgcactca
ggactcacgcgccagttcgaagccggaagggcgcagggcggaccgtggtggctggtcggc
gtcgaggaccgcaacggcaaccacgtctccgtcgaacgcgacgacaacggtgtgccgctc
accgtcacccacggcggtggttaccgcatacgcgtcgaccacgacgaccagcagcgcatc
accgcgctgtgggccctcaccgacgacgacccggtacgcctgcgcaccttctgctacgac
gccgagaccgggaacctgggcgaagtccgcaacgcggtcgacgcacccacgcggttcacc
tacgacagcgcccaccgcgtgacggggtggcgggactccaacgacaccgagttcgcctac
gtctacgacgccgggggacgtgtgatcgagacccgtgggaccgacggcgtcctcaactcc
cgcctgacctacggcgagcgccaggacgacggcaccagcaccgccacgtacaccgattca
ctcggcgatacgacgatctaccgggccaaccggcgtgggcagatcgtcgcgatcaccgat
ccgctcggacacaccatcacccagacctgggaccaccacgaccaactgctctcccgcact
gaccctctgggtcgtaccacccgctggacgtgggacgacgcaggtgccctggtctcggtc
acggctcccgatggcacaagcagccacgtgacctacaacgcgttgcacctgccggtccgc
atcaccgatccgcagggggcggcctacgtccaggacttcgacgcacggggcaactgcact
gccctgaccggaccggacggctcggttcgcctgttcacccatcattcgacgggcgccgtc
gccgtgatcagcgggcccgcgggcgacacactccgtatcgacaccgacccggcgggcctg
gccaccgtcgtggaagacgcgcaggggaaccgcacccgctatctgcgcgacgccctcgga
cgcccggcgcgcatcaccgacccggtcggggccaccaccacgctcgtgtgggacgcggag
ggccgactgcgagaacgtaccgcggccaacggcgccaccgaatcctggtcgtacgacgga
gagggcaactgcaccgaccacaccgacgctgtcggggggcgtacgcgactcgtccacggc
cccttcgacctgctggtcgcccgcatctccccggacggcgtggaacaccggttccgctat
gacaccgaacgccggctgaccgaggtgctcaacccccagggagccgtgtggaagtacgtt
tacgacgccgccggacaactggtgaaggagaccgacttcgacgggcacgagacgacatac
cgctacgacgcgacgggcgacctgaccgcgcggaccaacgcggcggggcagaccgtcgag
taccactacgacgcgtccggacaactgatcgagaaggtcgtcgacgaccgcaggaccgtc
ttccggaacgacgcgtgcgggcggctcgtctcagcagccggtcccgacgggacactggcc
tacgcgtacgacgcggtgggtcgggtcattgcagagaccatcgacggccggacactgacc
acggactgcgacgcctcggggcgccggacactacgcaggacgcccgggggcgtcgagaca
acgtactcctacgacacggccggccgctacgccgagctgtcgctctctggccgcaccctc
tccttcgagcacgacgcggcgggacgggaagtgctgcggcacctcggcgaccgattcacc
ctcgccttcacctggcatcccgtcggcagcctgagcggccagacactcaccgtccacgac
accgcgcagccgtcgatccagcgcagctacacctaccgtcatgacggactcctgaccggc
atcaccgaccgggacgctggccggcgctcgttcctcctggaccgggcgggacgggtcagc
gccgtagaggccggacgctggagcgagagctacgcctacgacgagaccggaaaccagacg
cgggcgacctggccggagaagcatcccggcagtcaggcgcgaggaacgcgcagctacgcc
ggaacgcgcctgatcagcgccggcaacgtgcgctacgagcacgacgccgccggccggtgc
gtgctccggcaggtcaaacatctctcccgcaagcccgacacctggcgttacacctgggac
gccgaggaccggctcgtctccgtcgtcacccctgacgccatctgctggcggtacctgtac
gaccccctcgggcggcgcatcgcgaagcagcgtctgtccgcaaacggcgctgtcaccgag
gaaacccggttcgtctgggacggctccacgctggtggagcagaccaccggggtcagcggc
gcggccgaactggtcacactcacctgggaccacgacggccaggcacctgtcacgcagacc
gagaccaagtcccttgcggacgctccgcaggacatcatcgaccagcgcttcttcgccatc
gtcaccgaccagatcggcactcccaccgaactcgtcgacgaggagggcaggatcgcgtgg
cgcacccgcacgactctctggggctcaactacctggaaccacgacgccaccgcctacacg
ccgctcaggttcccgggccagtactacgaccccgagacggggctgcaccacaactacttc
cgtcactacgatccggagaccgcgcgctacctgacctcggacccccttggcctggacccc
gcgccgaactccttcgcctacgtcgacaacccgcacacgctgtccgacccgctgggcctc
actccctgcgacgagaacgacgtcacgtggggcggccgggtccgctacggtgcgcccggt
cccggaggccgcaccacgaccatgcgcgcgacgatcgagtccgacatgaccggcggcaag
accgatccccgggtcaatgtgcccggttaccagaagtacaagaagctcaacaagacgcac
ttgctcggcgctcagatcggcggctccaaccgggacccccgcaacttcgtcaccatgcac
cggttcgccaattcgccggtcatgcggaagatcgaggaccagatcagggaagcggtcgac
aaacatggtgagacgatcgagtacaccgtcacgcccgtctaccgcacgaacaaccccgcc
gatgtcattccgctggggctcaccgtcgaggcccggggcaacaagggattcaccttcact
ccctacgagggcggcagcagtaccaacatcgtcactatcctgaacgtccccaaacgcata
tga
DBGET
integrated database retrieval system
