Streptomyces noursei ATCC 11455: SNOUR_13075
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Entry
SNOUR_13075 CDS
T04806
Name
(GenBank) Putative ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
snr
Streptomyces noursei ATCC 11455
Pathway
snr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SNOUR_13075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snr03019
]
SNOUR_13075
Messenger RNA biogenesis [BR:
snr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SNOUR_13075
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ANZ15922
LinkDB
All DBs
Position
complement(3003077..3004762)
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AA seq
561 aa
AA seq
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MSHPHPELGAPPKLPEGGLRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGI
DLILPDFTSVRDRLDDIDGIVLTHGHEDHIGGVPYLLREKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVAEGDRERLGPFECQFVAVNHSIPDALAVAIRTPAGMVVHTGDFKMDQLP
LDRRLTDLPAFAKLGEEGIDLLLSDSTNAEVPGFVPPERDISNVLRQVFASAQKRIIVAS
FASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARELGYLNVPAGLVVDVKTLDDLPD
DEVVLVCTGSQGEPMAALSRMANRDHQIRIVQGDTVILASSLIPGNENAVYRVINGLSRW
GAHVVHKGNAKVHVSGHASAGELLYFYNICKPKNLMPVHGEWRHLRANAELGALTGIPKD
RIVIAEDGVVVDLVNGIAKIAGKVQAGYVYVDGLSVGDVTEAHLKDRRILGDEGIISVFV
VVDSSTGKTVGGPNVHARGSGIDDKDFSAVVPKIDEALAKAAQDGIAEPHQLQQLIRRAV
GKWVSDNYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcaccctgagctcggcgctccgccgaagcttcccgaaggtggcctgcgc
gtcaccccgctcggcggcctgggcgagatcggccgcaacatgacggtcttcgaatacggc
ggccggctgctgatcgtcgactgcggagtgctcttccccgaggaggagcagcctggaatc
gacctgatcctgcccgacttcacgtccgtcagggaccgcctcgacgacatcgacggcatc
gtgctcacgcacggccacgaggaccacatcggcggtgtcccctacctcctccgggagaag
ccggacatcccgctgatcggctccaagctgaccctggccctcatcgaggccaagctccag
gagcaccggatccgcccctacacgctggaggtcgccgagggcgaccgcgagcgcctgggc
cccttcgagtgccagttcgtcgccgtcaaccactccatccccgacgcgctcgcggtcgcc
attcgcacccccgcgggcatggtcgtccacaccggcgacttcaagatggaccagctcccg
ctggaccgtcggctgaccgacctcccggccttcgccaagctcggcgaggagggcatcgac
ctcctcctctccgactccacgaacgccgaggtccccggcttcgtcccgccggagcgcgac
atctccaacgtgctgcgccaggtgttcgccagcgcgcagaagcgcatcatcgtcgccagc
ttcgccagccatgtgcaccgcatccagcagatcctcgacgcggcgcacgagtacggccgt
cgggtcgccttcgtcggccgttccatggtccgcaacatgggcatcgcccgcgaactgggc
tacctgaacgttcccgcgggcctggtcgtcgacgtcaagaccctcgacgacctgccggac
gacgaagtggtgctggtctgcacaggctcccagggcgagccgatggccgccctctcccgg
atggccaaccgcgaccaccagatccgcatcgtccagggcgacacggtcatcctggcctcg
tcgctcatccccggtaacgagaacgcggtctaccgcgtgatcaacggcctcagccgttgg
ggcgcccacgtggtccacaagggcaacgccaaggtccacgtctcgggccacgcctcggcc
ggcgagctgctgtacttctacaacatctgcaagccgaagaacctcatgccggtccacggt
gaatggcgccacctccgtgccaacgccgaactgggcgcgctgacgggcatccccaaggac
cgcatcgtcatcgcggaggacggcgtcgtcgtcgacctggtcaacggcatcgccaagatc
gccggcaaggtccaggccggctacgtctacgtcgacggcctctcggtcggcgatgtcacc
gaggcgcacctcaaggaccgccgcatcctgggcgacgagggcatcatctcggtcttcgtg
gtcgtggacagcagcaccggcaagaccgtcggcggccccaacgtccacgcccgtggctcg
ggcatcgacgacaaggacttcagcgccgtcgtccccaagatcgacgaggcactggcgaag
gcggcccaggacggcatcgccgagccccaccagctccagcagctgatccgccgcgcggtc
ggcaagtgggtgtcggacaactaccgtcgccgcccgatgatcctccccgtggtcgtcgag
gtctga
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