Streptomyces noursei ATCC 11455: SNOUR_23215
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Entry
SNOUR_23215 CDS
T04806
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
snr
Streptomyces noursei ATCC 11455
Pathway
snr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
snr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SNOUR_23215 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snr03021
]
SNOUR_23215 (rpoC)
03400 DNA repair and recombination proteins [BR:
snr03400
]
SNOUR_23215 (rpoC)
Enzymes [BR:
snr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SNOUR_23215 (rpoC)
Transcription machinery [BR:
snr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SNOUR_23215 (rpoC)
DNA repair and recombination proteins [BR:
snr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SNOUR_23215 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Motif
Other DBs
NCBI-ProteinID:
ANZ17912
LinkDB
All DBs
Position
5250888..5254787
Genome browser
AA seq
1299 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITFVDEERRTRDLPSLEAHVSVERQQIEQRRDSDLEARAKKLETD
LAELEAEGAKADARRKVREGAEREMKQLRDRAQREIDRLDEVWNRFKNLKVQDLEGDELL
YRELRDRFGTYFDGSMGAAALQKRLETFDLDEEAERLREIIRTGKGQKKTRALKRLKVVS
AFLQTRNSPKGMVLDCIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDEEEREVKGE
GRSFSSVSEAIMAFDARELSLQAKVDIRFPIGTVPPRGWTPPAPVEGEPEWQQGDSFRLR
TTLGRALFNELLPEDYPFVDYSVGKKQLSAIVNDLAERYPKVIVAATLDNLKASGFYWAT
RSGVTVAVSDIVVPEAKKAIVSGYEAQDEKVQKQYERGLITKDERTQELINIWTKATNEV
AEAMNENFPKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFREGLS
VLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLKLRIGSKG
ADGILRKADDVESSVYARMLAEDVVVDGKVVAPANVDLGDVLIDQLIMHGVEEVKTRSVL
TCESAVGTCAFCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDIT
LGLPRVVELFEARTPKGVAPISEAAGRVRIEETEKTKKVIVTPDDGSDEMPYGVSKRARL
LVGEGDHVVVGQPLTVGAINPHDVLRILGQRAVQVHLVGEVQKVYNSQGVAIHDKHIEII
IRQMLRRVTIIESGDAELLPGELVERSKFEGENRRVVAEGGHPASGRPQLMGITKASLAT
ESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYRNIRVEPTEE
AKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNQ
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctgcggatcggccttgccaccgctgacgacatc
cgtcagtggtcccacggcgaggtcaagaagccggagaccatcaactaccgcaccctcaag
cccgaaaaggacggactcttctgcgagaagatcttcggtcctacccgggactgggagtgc
tactgcggtaagtacaagcgcgtccgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtcactcgcgccaaggtgcgtcgtgagcggatgggccacatcgagctggccgctcct
gtcacccacatctggtacttcaagggtgtgccgagccggctgggctacctgctggacctc
gcgccgaaggacctcgagaaggtcatctacttcgccgcgtacatgatcacgttcgtggac
gaggagcgccgcacccgcgacctgccctcgctggaggcccacgtctccgtcgagcgccag
cagatcgagcagcgccgcgactccgacctggaggcccgcgccaagaagctcgagaccgac
ctggccgagctcgaggccgagggcgccaaggccgatgcccgccgcaaggtgcgcgagggt
gccgagcgtgagatgaagcagctgcgcgaccgtgcgcagcgcgagatcgaccgcctcgac
gaggtctggaaccgcttcaagaacctcaaggtccaggacctggagggcgacgagctcctc
taccgcgagctgcgtgaccgcttcggcacgtacttcgacggctcgatgggcgccgccgcg
ctgcagaagcgcctggagaccttcgacctggacgaggaggccgagcgcctccgcgagatc
atccggaccggcaagggccagaagaagacccgtgcgctcaagcgcctcaaggtcgtctcc
gccttcctgcagacccgcaacagccccaagggcatggtgctggactgcatcccggtgatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctgaagcggcttctcgacctc
ggcgcgcccgagatcatcgtgaacaacgagaagcgcatgctccaggaggccgtcgacgcg
ctcttcgacaacggccgtcgtggtcgcccggtcacgggccccggcaaccgcccgctgaag
tcgctgtccgacatgctcaagggcaagcagggtcgcttccgtcagaacctgctcggtaag
cgtgtggactactccgcgcgttccgtcatcgtcgtcggcccgcagctgaagctgcaccag
tgcggtctgcccaaggccatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtggacctcaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcgcggccgc
accgtggtgtacgacgtcctcgaagaggtcatcgccgagcacccggtgctgctgaaccgt
gcgcccaccctgcaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtccacctgccgctctccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctcaagccggccgacggccgtccggtcaccatgccgacccaggac
atggtgctgggcctcttcttcctcaccacggacgaggaggagcgcgaggtcaagggtgag
ggccgctcgttctcctcggtctccgaggcaatcatggccttcgacgcccgcgagctctcg
ctccaggcgaaggtcgacatccgcttcccgatcggcacggtgccgccgcgcggctggacc
ccgccggccccggtcgagggcgagccggagtggcagcagggcgacagcttccggctgcgg
acgaccctgggccgcgcgctcttcaacgagctgctgcccgaggactacccgttcgtcgac
tactcggtgggcaagaagcagctctccgcgatcgtcaacgacctggccgagcggtacccg
aaggtcatcgtggcggcgacgctcgacaacctgaaggcgtccggcttctactgggccacc
cgttccggcgtcaccgtcgccgtctccgacatcgtcgtgccggaggccaagaaggcgatc
gtctccggttacgaggcgcaggacgagaaggtccagaagcagtacgagcgcggtctgatc
accaaggacgagcgcacgcaggaactcatcaacatctggaccaaggcgaccaacgaggtt
gccgaggcgatgaatgagaacttcccgaagaccaaccccatcttcatgatggtggactcg
ggtgcgcgcggaaacatgatgcagatgcgtcagatcgcgggtatgcgtggtctggtgtcg
aacgccaagaacgagacgatcccgcgtccgatcaaggcgtcgttccgcgagggtctgtcc
gtgctggagtacttcatctccacccacggtgcccgtaagggtctggcggacaccgccctg
cgtaccgccgactccggttacctcacccgtcgtctggtcgacgtctcccaggacgtcatc
attcgcgaggaggactgcggcaccgagcgcggcctgaagctgcggatcggttcgaagggt
gccgacggcatcctgcgcaaggcggacgacgtcgagtcctccgtgtacgcgcggatgctg
gccgaggacgtcgtggtggacggcaaggtcgtcgccccggccaacgtcgacctcggtgac
gtgctgatcgaccagctgatcatgcacggcgtcgaagaggtcaagacccgctcggtcctg
acctgtgagtccgcggtcggcacctgtgccttctgctacggccgttcgctggccaccggc
aagctggtcgacatcggtgaggcggtcggcatcatcgccgcccagtccatcggtgagccc
ggcacccagctgaccatgcgtaccttccacaccggtggtgtggccggtgacgacatcacc
ctgggtctgccgcgtgtcgtcgagctcttcgaggcccgtacgcccaagggtgtcgccccg
atctcggaggcggccggccgcgtccgcatcgaggagaccgagaagaccaagaaggtcatc
gtcaccccggacgacggcagcgacgagatgccgtacggcgtctccaagcgtgcccgtctg
ctggtcggcgagggcgaccacgtggtggtcggccagccgctgaccgtcggtgccatcaac
ccgcacgacgtgctgcggatcctcggtcagcgtgcggtccaggtccacctggtcggcgaa
gtccagaaggtctacaactcgcagggcgtggcgatccacgacaagcacatcgagatcatc
atccggcagatgctgcgccgcgtgacgatcatcgagtccggcgacgcggagctgctgccg
ggcgagctggtggagcgttcgaagttcgagggcgagaaccgtcgcgtggtggcggaaggc
ggccacccggcctccggccgtccgcagctgatgggtatcaccaaggcttcgctggcgacg
gaatcctggctgtcggccgcctccttccaggagacgacccgagtgctgacggacgcggcg
atcaacgccaagtccgacagcctcatcggcctcaaggagaacgtcatcatcggtaagctc
atcccggccggtacgggcctgtcccgttaccgcaacatccgggtcgagcccaccgaggag
gccaaggccgcgatgtactcggccgtcggttacgacgacatcgactactcgcccttcggc
accggctccggccaggcggtcccgctggaggactacgactacggtccgtacaaccagtaa
DBGET
integrated database retrieval system
