Sneathia vaginalis: VC03_00245
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Entry
VC03_00245 CDS
T03854
Name
(GenBank) hypothetical protein
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sns
Sneathia vaginalis
Pathway
sns03410
Base excision repair
sns03430
Mismatch repair
sns03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sns00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VC03_00245
03430 Mismatch repair
VC03_00245
03440 Homologous recombination
VC03_00245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sns03400
]
VC03_00245
DNA repair and recombination proteins [BR:
sns03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
VC03_00245
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
VC03_00245
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VC03_00245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
DUF34_NIF3
Motif
Other DBs
NCBI-ProteinID:
AKC95027
UniProt:
A0A0E3Z9E4
LinkDB
All DBs
Position
complement(40491..43070)
Genome browser
AA seq
859 aa
AA seq
DB search
MQNTKWNLREKVSRISTLNIDKDVLNILASRGITKKEDIINFIHPDIKALSSPSLLVDLD
KAVDRILKAIDNNEKICIYGDYDVDGITSTSILYLAFKKLGAKNLDFYIPIRDEGYGLNN
QALDQIKANGTDLVITVDCGITSYKEINYANSIGLSVIITDHHNLLDPVVPNAYAVINPK
RLENKYPFRELAGVGTAFMVVLALFKRKGIYEEAFSYIDLVCLGTIADVVPLIKENRIIV
KYGLERLKNTQNLGLKMLLKKVFPDKLDEYSSGDVGFTISPIFNAAGRLQDAKLVVYLLI
SDNEREISTIIDELLLKNKERKEIQNSIFDLAKEEIEKYSQTDYVLISSSPKYHHGVIGI
VAAKLVDMYYKPCIILEEKSDENIAVASCRSIPNFDITKALQYCGDLLVRYGGHTGAAGF
TIEIQNIQKFREKINEYAKKTLKEEDFYKVIDIDKVLPIQKISYEFFKTLELLKPFGFGN
PTPTFLTKNVIVENAKLIGQDKSHLSFDFSKKGFATKGAIWFSKGDKINEMNSSIFYDIV
FKININLFKGKFYTKVLIDDMKESTLKSSDKFTFLKSLFETSFPMKSVFYSYIYLEKDSM
LNIEYTSNRVVLSNTRIVGKLDENISRLLTCLHTFYAFNFKVKVESTNVYDGVNNVGIII
YRDYGISTYKKNDKNIFNYIKSNIIGPLEYDSTTKKALSCLYKENMNILLSKKNITGPIS
HNILLTFCMYNMVKGFKTQILSSDKDILNDKRLVFYMSKEKSPYLILDKNTYKEKVDLTN
FKKIILLDDSISEKDNFMSVKNEVILPKNVLELNNENIKKYGMENIYTKFLPLKEKKKFV
DKINNNEIILSDDSIYEII
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaacactaaatggaatttaagagaaaaggtatctcgtatatctactcttaacatc
gataaagatgttttaaatatccttgcttctagaggaattacaaaaaaagaagacattatt
aattttatacacccagatattaaggccctaagctcacctagtctattagtagatctagat
aaagctgtggatagaatattaaaagctatagataataatgaaaagatttgtatatatggt
gattatgacgtggacggtattacttccacgtctattctatacttagcctttaaaaagcta
ggtgctaaaaatcttgacttctacattccaataagagacgaaggatatggacttaataat
caagcattagatcaaataaaagctaatggtacagatcttgtaataacagttgactgtggt
attacatcatacaaggaaattaactatgctaattctataggtcttagtgtgataattaca
gaccatcataacttactagatccagttgtacctaatgcatatgctgttataaaccctaaa
aggcttgaaaataaatacccttttagagaactagcaggtgttggtacagcatttatggta
gtacttgcactatttaaaagaaaaggtatatatgaagaagctttctcatatatagatttg
gtttgtcttggtactattgcagatgttgttccattaattaaagaaaataggataattgtt
aaatacggtcttgaaagactaaaaaacacacaaaatctaggacttaaaatgctcctaaaa
aaagtctttcctgataagcttgatgaatattcttcaggtgatgtaggatttacaatatcc
ccaatatttaatgcagctggtagattacaagatgcaaaacttgtagtatatcttttaatt
tctgacaacgaaagagaaattagcactataatagacgaattactacttaaaaacaaagaa
agaaaagaaatacaaaatagcatcttcgatttagcaaaagaagaaatagaaaagtattca
caaactgactatgtattaattagttcaagccctaaataccatcatggtgtaataggcata
gttgcagcaaaattagtagatatgtattacaagccttgcataatattagaagaaaaaagt
gatgaaaatatcgctgttgcatcttgtcgtagtatacctaattttgatataacaaaggca
ctacaatattgtggagacttacttgtaagatatggtgggcatactggtgctgcaggtttt
acaatagaaatacaaaatatacaaaaatttagagaaaaaattaatgaatacgctaaaaaa
acacttaaagaagaagatttctataaggtaatagatatagataaggtcttacctatacaa
aaaatttcatatgaattctttaaaaccttagaattacttaaaccttttggatttggtaat
cctacaccaacatttttaactaaaaatgttattgtagaaaacgcaaagttaatagggcaa
gataagtcacacctaagttttgacttctcaaaaaaaggatttgctacaaaaggagctata
tggttttctaaaggtgataaaattaatgaaatgaattctagtatattttatgatatcgtt
tttaagataaatattaatctatttaaaggaaagttctatactaaagttttaatagatgat
atgaaagaatctacacttaaatctagtgataaatttacatttttaaaatctttatttgaa
acaagtttccctatgaaatctgtattctattcatatatttatcttgaaaaagatagtatg
ttaaatattgaatatacaagtaatcgtgttgtattatctaatacaagaatcgtaggtaaa
ttagatgaaaatatttcaagacttttaacttgccttcacacattttacgcttttaacttc
aaagttaaagttgaaagcaccaatgtatatgatggggttaataacgttgggattattatc
tacagggactatggaataagtacgtataagaagaatgacaaaaatatttttaactatatt
aaatctaatataataggcccactagaatatgactcaacaacaaagaaagccttatcttgt
ttgtataaggaaaatatgaatatacttttatctaaaaaaaatatcactggccctataagt
cacaatatattacttactttttgtatgtataacatggttaaaggttttaaaactcaaatt
ttaagtagtgataaagatatcttgaatgataaaagacttgtattctatatgtctaaagaa
aaaagtccatatttaatattagataagaatacgtataaagaaaaagtagacttaactaat
tttaaaaagataatactcttagacgatagtatttcagaaaaagataactttatgtctgtt
aaaaatgaggttattttacctaaaaatgtgctagaacttaataatgaaaatattaaaaaa
tatggtatggaaaatatatatacaaaatttcttccactaaaggaaaaaaagaaatttgta
gataaaataaataacaatgagattatactgtcagatgatagtatttatgagataatataa
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integrated database retrieval system
