Sneathia vaginalis: VC03_02635
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Entry
VC03_02635 CDS
T03854
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sns
Sneathia vaginalis
Pathway
sns03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sns00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VC03_02635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sns03019
]
VC03_02635
03016 Transfer RNA biogenesis [BR:
sns03016
]
VC03_02635
Enzymes [BR:
sns01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
VC03_02635
Messenger RNA biogenesis [BR:
sns03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
VC03_02635
Transfer RNA biogenesis [BR:
sns03016
]
Prokaryotic type
tRNA degradation factors
VC03_02635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
KH_KhpA-B
Snapin_Pallidin
Motif
Other DBs
NCBI-ProteinID:
AKC95437
UniProt:
A0A0E3ZC62
LinkDB
All DBs
Position
526319..528514
Genome browser
AA seq
731 aa
AA seq
DB search
MFENEKNFEIKLGNEVLKVNTGRIARQAGGAVLLTCGKTTILATATRSKDVKPGQDFFPL
TVDYIEKFYASGKFPGGFVKRESKPSTEEILISRLVDRPIRPLFPESFLNAVHVVINTVS
YDGVNMPENLATIGASLALGISDIPFEGPVAGVTVGYIDGEYVLNPNKEQQEVSKIYLSV
AGTMDAITMVEAWSNEVSEDEMLDAIMFGHEQIKQICKGQKEIIDEIGQEKLEVEEIKFD
EKVVEFLDGYEKELKKAILVPGKLEKQEAVDNLGEELLGIFREKMAREIANEKMQEKELS
DIIDQLLNKDNEKNLEYYEQEFGKYYHEMEKRIVRNLIIYEKYRPDGRKINEIRPISAQV
DVLPVPHGSALFTRGETQSLATVTLGSKDDEQIVDGLDEEKRKKFILHYNFPPYSVGEAG
FMRAPGRRELGHGNLAERALKAVMPTEDEFPYTVRVVSDITESNGSSSQASICGGCLALM
AAGVPIKGTVAGIAMGLIKEEDNYTVLTDIQGLEDHLGDMDFKVAGTKKGITAIQMDIKI
KGITKDIMKIALKQAHEARFNIIDIMEAEIPEPRKQLAENAPKIINLRIDPSTIAVLIGP
AGKTIKAIIEETGVDINIEDDGRVSIFGKDMDMMNRALELVKKYTLTVELNKEYEGKVVK
LAKFGAFVEIAPGKEGLLHISEISDKHVKNVEDVLKEGQIVNVKVINIENDKFSLSMKKV
NKELEADDISK
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaaatgaaaaaaatttcgaaattaaattaggaaacgaggtattaaaagttaat
acaggaagaattgcaagacaagctggaggagcagtgctattaacttgtggtaagacaaca
atattagcaactgcaacaagatcaaaagatgtaaaaccaggtcaagatttctttccacta
actgttgactacattgaaaaattttatgcatctggtaaatttccaggagggtttgtaaaa
agagaatcaaagccatcaacagaagaaatattaatttcaagattagtagatagaccaata
agaccactatttccagaaagctttttaaatgctgttcatgtagttattaacactgtttca
tatgatggagtaaatatgccagaaaatctagcaacaataggtgcatcacttgcactaggt
atttcagatataccatttgaaggaccagttgctggagttactgttggatatatagatgga
gaatatgtattaaatccaaataaagaacaacaagaagtaagtaaaatatatttatctgtt
gcaggtacaatggatgctattaccatggttgaagcatggtcaaatgaagttagtgaagat
gaaatgttggatgctataatgtttggtcatgaacaaataaagcaaatatgtaagggacaa
aaagagataatagatgaaataggtcaagaaaaacttgaagttgaagaaattaaatttgat
gaaaaagttgtagaatttcttgatggttatgaaaaagaactaaaaaaagctatattagtt
ccaggtaaattagaaaaacaagaagcagtagataatttaggtgaagaattgctaggaatt
tttagagaaaaaatggcaagagaaattgcaaatgaaaaaatgcaagaaaaagaattatcg
gacataattgaccaattgttaaataaagacaatgaaaagaatttagaatattatgaacaa
gaatttggtaaatattatcatgaaatggaaaaaagaatagttagaaacttaataatttat
gaaaaatatagaccagatggaagaaaaataaatgaaatcagacctataagtgcacaagta
gatgttttaccagtaccacatggttcagcactatttacaagaggtgaaactcaatcatta
gctactgtaacactaggttcaaaagatgatgaacaaatagttgatggtctagatgaagaa
aagagaaagaaattcatattacactataacttcccaccatattcagtaggtgaagcagga
tttatgagagcaccaggaagaagagaattaggacatggtaatttagctgaaagagcatta
aaagctgttatgccaacagaagatgaatttccatatacagtaagagttgtttcagatatt
acagaatctaatggttcatcatcacaagcatcaatttgtggtggatgtcttgcattaatg
gcagctggtgtacctattaaaggaactgttgcaggtattgctatgggactaataaaggaa
gaagataattatacagtattaactgatatacaaggattagaagatcacttaggagatatg
gactttaaggttgcaggtacaaaaaaaggtattacagcaatacaaatggatattaagatt
aagggtataacaaaagatataatgaaaattgcattaaaacaagcacatgaagcaagattt
aatattatagacataatggaagcagaaatacctgaaccaagaaaacaattagcagaaaat
gcacctaagataattaatttaagaatagatcctagtacaattgctgtattaataggacca
gcaggtaaaactattaaggctattatcgaagaaactggtgtagatattaatatagaagat
gatggtagagtaagcatatttggaaaagatatggatatgatgaatagagctctagaatta
gttaagaaatatacattgactgttgagttaaataaagaatatgaaggtaaagttgttaaa
cttgctaaatttggtgcctttgttgaaatagcaccaggtaaagaaggactattacatata
tcagaaatttcagataagcacgtaaaaaatgttgaagatgtattaaaagaaggacaaatt
gtaaatgttaaggttataaacattgaaaatgataaatttagcttaagtatgaaaaaagta
aataaggagttggaagctgatgacattagcaaataa
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