Sneathia vaginalis: VC03_05065
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Entry
VC03_05065 CDS
T03854
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sns
Sneathia vaginalis
Pathway
sns03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sns00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VC03_05065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sns03019
]
VC03_05065
03009 Ribosome biogenesis [BR:
sns03009
]
VC03_05065
Enzymes [BR:
sns01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VC03_05065
Messenger RNA biogenesis [BR:
sns03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VC03_05065
Ribosome biogenesis [BR:
sns03009
]
Prokaryotic type
rRNA helicases
VC03_05065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Hera_DD
AAA_19
Cas3-like_C_2
AAA_22
DUF2000
Methyltransf_17
Motif
Other DBs
NCBI-ProteinID:
AKC95850
UniProt:
A0A0E3ZAD8
LinkDB
All DBs
Position
complement(1027868..1029451)
Genome browser
AA seq
527 aa
AA seq
DB search
MKFNELGLSESTLKAIMEKGFTEPTEIQKLVIPELLKESTNLIGQAQTGTGKTAAFSLPI
LELLEPTKDVKALILTPTRELAVQVSEEIYSLKGDKDIRILAVYGGASIETQLRSLKKGV
DIVVGTPGRVMDMINKKALKLKQLEYFILDEADEMLNMGFIDDIKEILKSTNDDKKMLFF
SATMPDEILAIAKEFMPSFKKIKVKKKELTTNLTKQIYFEVRPDDKFEALCRVLDYRADF
YGIVFCKTKQDVDEVTKKLKARGYSAECIHGDITQGLREKTLDLFKQKILNVLVATDVAA
RGIDVSDLTHVINYSIPQEPEAYVHRIGRTGRAGKKGVAVTFVTPKEINKLLQIKRLTKS
EIVKESVPNVEQILEAKKENLLASIDEIVLEDDYGQYMDLARKILSNRNHDVIVASLLRH
VYDDEFLKENYNEIKDVSIKVDDKTRLFIALGQRDGMKPSKLLELLHKKAKVPGRKIRDI
KIMDKFSFITVPFKEAEEIMKAMNRKDAKKPIVEISNGKSKSKKGRR
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttaatgaattaggacttagcgaatctacgctaaaagcgattatggagaaagga
tttactgagccaacagaaatacaaaagttagttatacccgaacttttaaaagagagtact
aacttaataggtcaagcacaaacaggtacgggtaaaacagcagcgttttcactgcctata
ctagaacttttagaacctacaaaagatgtaaaggctttaattttaacaccaactagagaa
ttagctgtacaggtatcagaagaaatatattcactaaagggtgataaggatatacgtata
cttgcagtatatggtggagcatcaatagaaacacaattaagatcactaaaaaaaggtgtg
gatatagttgttgggacacctggacgtgtaatggatatgataaataagaaggcattaaaa
ttaaaacaattagaatatttcatattagatgaagctgatgaaatgcttaatatgggattt
atagacgacataaaggaaattttaaaaagtactaatgatgataagaaaatgttgttcttc
tcagctactatgccagatgaaatattagctattgcaaaagagtttatgcctagctttaag
aagataaaggtcaaaaagaaagagttaacaactaatttaacaaagcaaatatactttgaa
gtaagaccagatgataagtttgaagcattatgtagagtattagactatagggcagatttt
tatggaatagtattttgtaagactaagcaagatgtagatgaagtaactaaaaaacttaag
gcaagaggatatagtgctgaatgtatacatggggatattacacaaggtctaagagaaaag
acactagatttattcaaacaaaaaatattaaatgtattagttgcaacagatgtagcagca
agaggaatagatgtatcagatttaacacatgtaataaactactctataccacaagaacca
gaagcctatgttcatagaatagggagaacaggaagagctggtaaaaagggagtggctgta
acatttgtaacacctaaggaaattaataagttgctacaaattaaacgtctaacaaaatct
gaaatagttaaagaaagtgttcctaatgttgaacaaatattagaagctaagaaagaaaat
ctattagcaagtatagatgaaatagtgctagaagatgactacggtcaatatatggattta
gcaagaaagatattgtcaaatagaaatcatgatgtaattgtagcatcactattaagacat
gtatatgatgatgaattcttaaaggaaaactataacgaaataaaagatgtgagcataaaa
gtagacgataaaactcgtctgttcatagccctaggacaaagagatggtatgaaaccatca
aaactactagaactattacataaaaaagcaaaagttccaggtagaaagataagggacata
aagattatggataagttttcatttatcactgttccattcaaggaagcagaagaaataatg
aaggcaatgaatagaaaagatgcaaaaaaacctatagtagaaatatcaaatgggaagtca
aaatcaaaaaaaggtagaaggtaa
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