Streptococcus pneumoniae Taiwan19F-14 (serotype 19F): SPT_0040
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Entry
SPT_0040 CDS
T00875
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
snt
Streptococcus pneumoniae Taiwan19F-14 (serotype 19F)
Pathway
snt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
snt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SPT_0040 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snt03400
]
SPT_0040 (mfd)
Enzymes [BR:
snt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SPT_0040 (mfd)
DNA repair and recombination proteins [BR:
snt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SPT_0040 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
MFD_D3
AAA_22
RecG_dom3_C
AAA_16
CAPN13-like_C_EFh
Motif
Other DBs
NCBI-ProteinID:
ACO23583
LinkDB
All DBs
Position
25233..28742
Genome browser
AA seq
1169 aa
AA seq
DB search
MVTLLDLFSENDQIKKWHQNLTDKKRQLILGLSTSTKALAIASSLEKEDRIVLLMSTYGE
AEGLVSDLISILGEELVYPFLVDDAPMVEFLMSSQEKIISRVEALRFLTDSSKKGILVCN
IAASRLILPSPNAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSLRGDIL
DIFEISQLEPCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKDYQRGQS
ALEKQISKTLSPILKSYLEEILSSFHQKQSHADSRKFLSLCYDKTWTVFDYIEKDTPIFF
DDYQKLMNQYEVFERELAQYFTEELQNSKAFSDMQYFSDIEQIYKKQSPVTFFSNLQKGL
GNLKFDKIYQFNQYPMQEFFNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDMLEEY
QIKLDSRDKTNICKESVNLIEGNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQHVSNA
ERLKDYNELEKGDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGDQISIPVEQIHL
LSKYISSDGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFAFSADDD
DQDAFDDAFPYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVND
HKQVVILVPTTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTATLEKLKNGQVDILI
GTHRVLSKDVVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSML
GIRDLSVIETPPTNRYPVQTYVLEKNDSVIRDAVLREMERGGQVYYLYNKVDTIVQKVSE
LQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENA
DHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMR
DLSIRGAGNLLGKSQSGFIDSVGFELYSQLLEEAIAKRNGNANANTRTKGNAELILQIDA
YLPDTYISDQRHKIEIYKKIRQIDNRVNYEELQEELIDRFGEYPDVVAYLLEIGLVKSYL
DKVFVQRVERKDNKITIQFEKVTQRLFLAQDYFKALSVTNLKAGIAENKELMELVFDVQN
KKDYEILEGLLIFGESLLEIKESKEENSI
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atggtgaccttattagatttattctcagaaaatgatcagattaaaaaatggcatcaaaat
ttaacagataagaaaagacaactaatacttggtttatcaacatctactaaggctcttgca
attgcaagcagtttagaaaaagaagataggattgtgttattgatgtcaacttatggagaa
gcagaaggacttgttagtgatcttatatctatcttgggtgaggaactcgtctatccattt
ttggtagatgatgctcctatggtggagtttttgatgtcttcacaggaaaaaattatttca
cgggttgaagccttgcgttttttgactgattcatctaagaaagggattttagtttgtaat
atcgcagcaagtcgattgattttaccgtctcccaatgcattcaaagatagtattgtaaaa
atctcagttggtgaagaatatgatcaacacgcgtttatccatcagttaaaggaaaatggc
tatcgaaaagttactcaagtacaaactcagggcgaatttagtcttcgaggagatatttta
gatatttttgaaatatcccagttagaaccttgtcgaattgagttttttggtgatgaaatt
gatggtatcaggtcatttgaagtagaaacacaattatcgaaagaaaataagacagaactc
actatctttccagctagtgatatgcttttgagagaaaaggattatcaacgaggacagtca
gctttagaaaaacaaatttcaaaaactttatcacctattttgaaatcatacctagaagaa
attctttcaagttttcaccaaaaacaaagtcatgcagactctcggaagtttttatctttg
tgctatgataagacatggactgtctttgattatattgaaaaagatactccaatattcttt
gatgattatcaaaaattgatgaatcagtatgaagtctttgaaagagaattagcgcagtac
tttacagaagaattacagaatagtaaagcattttctgatatgcagtatttttctgatatt
gaacaaatctataaaaaacaaagtccagtgacctttttttctaatcttcaaaagggttta
ggaaatctcaaatttgacaaaatttatcaattcaatcaatatcctatgcaggaatttttc
aatcagttttcttttctaaaagaagaaattgaacgatataaaaaaatggattacaccatt
attctgcagtctagcaattcaatgggaagtaaaacattggaggatatgttagaggaatat
cagattaaattggattctagagataagacaaatatctgtaaagaatctgtaaacttaata
gagggtaatctcagacatggttttcattttgtagatgaaaagattttattgataactgaa
catgagatttttcaaaagaaattaaagcgtcgttttcgaagacaacatgtttcaaatgca
gagagattaaaagattacaatgaacttgaaaaaggggactatgttgtccatcatatccat
gggattggtcaatatctaggaattgaaaccattgaaatcaagggaattcatcgtgattat
gtcagtgtccaataccaaaatggtgatcaaatttctattcccgtggaacagattcatcta
ctgtccaaatatatttcaagtgatggtaaagctccaaaactcaataaattaaatgacggt
cattttaaaaaggccaagcaaaaggttaagaaccaggtagaggatatagctgatgattta
atcaaactctactctgaacgtagtcagttgaagggttttgctttctcagctgatgatgat
gatcaagatgcctttgatgatgctttcccttatgttgaaacggatgatcaacttcgtagt
attgaggaaatcaagagggatatgcaggcttctcagccaatggatcgacttttagttggg
gatgttggttttggaaagactgaagttgctatgcgtgcagcctttaaagcagtcaatgat
cacaaacaggttgtcattctagttccgacgacggttttagcgcaacagcactatacgaat
tttaaggaacgattccaaaattttgcagttaatattgatgtgttgagtcgctttagaagt
aaaaaagagcagactgcaacacttgaaaaattgaaaaacggtcaagtcgatattttgatt
ggaacacatcgtgttttgtcaaaagatgttgtgtttgctgatttgggcttgatgattatt
gatgaggaacagcgatttggtgtcaagcataaggaaactttgaaagaactgaagaaacaa
gtggatgtcctaaccttgaccgctacgccaatccctcgtaccctccatatgtctatgctg
ggaatcagagatttatctgttattgaaactccgccgactaatcgctatcctgttcagacc
tatgttttggaaaagaatgatagtgtcattcgtgatgctgtcttgcgtgaaatggagcgt
ggaggtcaagtttattatctttacaacaaagttgacacaattgttcagaaggtttcagaa
ttacaggagttgattccggaggcttcgattggatatgttcatggtcgaatgagtgaagtc
cagttggaaaatactctattagactttattgagggacaatacgatatcttggtgacgact
actattattgagacaggggtggacattccaaatgctaatactttatttattgaaaatgcg
gaccatatgggcttgtcaaccttatatcagttaagaggaagagtcggtcgtagtaatcgt
attgcttatgcttatctcatgtatcgtccagaaaaatcaatcagtgaagtctctgaaaag
agattagaagcgattaaaggatttacagaattgggctctggctttaagattgcaatgcga
gatctttcgattcgtggagcaggaaatcttttaggaaaatcccagtctggtttcattgat
tctgttggttttgaattgtattcgcagttattagaggaagctattgctaaacgaaacggt
aatgctaacgctaacacaagaaccaaagggaatgctgagttgattttgcaaattgatgcc
tatcttcctgatacttatatttctgatcaacgacataagattgaaatttacaagaaaatt
cgtcaaattgacaaccgtgtcaattatgaagagttacaagaggagttgatagaccgtttt
ggagaatacccagatgtagtagcctatcttttagagattggtttggtcaaatcatacttg
gacaaggtctttgttcaacgtgtggaaagaaaagataataaaattacaattcaatttgaa
aaagtcactcaacgactgtttttagctcaagattattttaaagctttatccgtaacgaac
ttaaaagcaggcatcgctgagaataaggaattaatggagcttgtatttgatgttcaaaat
aagaaagattatgaaattttagaaggtctgctgatttttggagaaagtttattagagata
aaagagtctaaggaagaaaattccatttga
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integrated database retrieval system
