Streptomyces niveus: BBN63_26645
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Entry
BBN63_26645 CDS
T04887
Name
(GenBank) ATP-dependent helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
snw
Streptomyces niveus
Brite
KEGG Orthology (KO) [BR:
snw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snw03019
]
BBN63_26645
Enzymes [BR:
snw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BBN63_26645
Messenger RNA biogenesis [BR:
snw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BBN63_26645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_22
AAA_19
NTPase_1
HA2_N
AAA_11
ResIII
AAA
Motif
Other DBs
NCBI-ProteinID:
AQU69229
UniProt:
A0A1U9QYQ3
LinkDB
All DBs
Position
complement(6214856..6217966)
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AA seq
1036 aa
AA seq
DB search
MIRDDVLGSLPVRTALPALEAALDGPGCAVLCAPPGTGKTTLVPLVLAGLVRPGGGARGP
RRRVIVAEPRRIAARAAARRMAWLLGERVGGSVGFTVRGERVVGRDTVVEVVTTGVLLQR
LQRDQELGGVDVVIIDECHERHLDADTVAAFLLDVRATLRPELRLVAASATTDAEGWARL
LGDAPVVEARGVTHPLEVVWAPPLRPVRPPHGMRVDPALLTHVASVVRGALAERTGDVLV
FLPGVGEIGRVAGQLGGRDELGAEVLQVHGRAPADVQDAVLAGSGDGNRRVVLATSVAES
SLTVPGVRVVVDSGLAREPRTDHARGLSALTTVRASQATARQRAGRAGREAPGVVYRCWD
EAQDARLARFPAPEIKVADLAAFALQAACWGDPDASGLALLDAPPAGALAAARAVLTAIG
AVDAEGRVTGRGVRMSRLGLHPRLARALLDGAAEVGARRAAEVVAMLSEEPPRAYGDDLA
SAWRTAKRGDDGYAARWRQESRRLASALPRSPEGGSHGAAGVDATGTGGTGRAERSPRGG
EAVGAARGGTAVQTGNDGGTGRARTGRVERPHGGSSTRGGEAAGETRTGRDDTVGEARRS
GGDAGAARSGGAVQAGNDSGASEVGAVSGADRHGEVGGAGRDERSPEGGEIVGAASAGRD
GRVGEARRSGRDDGATRGGEAAQAGNDGGGDVSRADRAGGAGKGGGGRERGGLADDVVVG
VVAAYAFPERVARARGAGAFLMVSGTGAELGDGSALRDAPWLAVAVADRPATAVSARVRL
AAVIDEDTARAAAAHLLVSGEEVRWEDGDVVARDVTRLGAVELSARPLRKPDPARVRAAL
LDGLRREGPGALLRWTRDAEALRERLGFLHRALGAPWPDVSDAALLDGADDWLEPELSKA
RRRADLARIEAGQALRRLLPWSSGQAGRLDELAPERILVPSGSRVRVDYGGEQPVLAVKL
QELFGLTATPTVAGVPVLVHLLSPAGRPAAVTADLASFWREGYRAVRAELRGRYPRHPWP
EDPTQAVATRRLNDRR
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
gtgatccgcgacgacgtcctcggcagtctgcccgtccgtaccgcactgcccgccctggag
gcggccctcgacgggccggggtgcgccgtgctgtgcgcgccgcccggcacgggcaagacg
acgctcgtgccgctggtgctggccgggctcgtgcggcccggcgggggcgcgcggggaccg
cggcggcgggtgatcgtcgccgagccgcgccggatcgccgcacgcgcggcggcacggcgc
atggcgtggctgctgggcgagcgggtcggcgggagcgtcggattcacggtacgcggggag
cgcgtggtggggcgcgacacggtggtggaggtggtgaccaccggggtgctgctccagcgg
ctccagcgcgaccaggaactcggcggcgtcgacgtggtgatcatcgacgagtgccacgaa
cggcacctggacgcggacacggtggcggcctttctgctggacgtacgggccacgctccgt
cccgaactgaggctggtggccgcgtccgcgacgaccgacgccgaggggtgggcgcgactg
ctgggggacgcgcccgtggtggaggcgcggggagtgacacatcctttggaggtcgtgtgg
gcgccgccgctccggccggtgcgtcccccgcacgggatgcgggtcgatcccgcgctgctg
acgcatgtggcctcggtggtacgcggggcgctggccgagcgcacgggcgacgtgctggtg
ttcctgccgggcgtcggcgagatcggccgtgtggcgggacagttgggcggccgcgacgaa
ctcggcgccgaggtgctccaggtgcacggccgggcgcccgcggacgttcaggacgcggtg
ctcgcgggatcgggggacggcaaccgccgcgtcgtactggcgacttcggtggcggagtcg
agcctgacggtgccgggggtgcgggtggtggtggactcggggctggcgcgtgagccgcgt
acggaccacgcgcgggggctgagcgcgctcaccacggtgcgcgcctctcaggcgaccgca
cgccagcgcgcggggcgggcggggcgtgaggcgccgggcgtggtgtaccggtgctgggac
gaggcgcaggacgcacggctcgcgcggttccccgcgccggagatcaaggtcgccgatctg
gcggcgttcgccttgcaggcggcgtgctggggagacccggacgcctcgggtctcgcactg
ctcgacgcgccgccggcgggggcgctggccgccgcgcgtgcggtgctgacggcgatcggg
gcggtggacgcggagggccgggtgaccggccgtggcgtccggatgtcccgcctcggcctg
cacccgcgcctggcccgcgccctgctcgacggcgcggcggaggtcggcgcacggcgggcg
gcggaggtggtggcgatgctgagcgaggaacccccgagggcgtacggcgacgacctggcg
tccgcctggcgcacggcgaaacgcggcgacgacggttacgcggcccgctggcgccaggag
tcccgaaggctggcctcggcactaccgaggagcccggagggcggctcacacggtgccgcc
ggggtcgatgcgaccggcaccggcgggacggggcgggccgaacgctcgccccggggcggc
gaggcggtgggagcggcccggggcggcacagccgtacagactgggaacgacggcggcacc
gggcgggcccggaccggaagggttgagcggccacacggcggcagctcaacccggggcggc
gaggccgcaggagagacccgcaccgggcgcgacgacacagtcggcgaggcgcgccgtagc
ggaggggacgccggcgccgcccggagcggcggagccgtacaggccgggaacgacagcggc
gccagcgaggtcggtgccgtcagcggtgccgatcggcacggcgaagtcggtggggcgggc
cgcgacgaacgctcacccgagggcggcgagattgtaggagccgccagcgccgggcgggac
ggcagagtcggcgaagcgcgccgtagcggacgggacgacggcgccacccggggcggcgaa
gccgcacaagccgggaacgacggtggcggcgacgtcagccgtgccgatcgggccgggggc
gccggcaaaggcggcgggggccgggagcgtggtgggctcgctgatgacgttgtcgttggg
gtcgtggccgcgtacgcgtttcccgagcgggtggcgcgggcgcggggggccggggcgttt
ctcatggtgtccgggaccggcgcggagctgggcgacgggtccgcgctgcgcgacgcgccg
tggctggccgtcgccgtcgcggaccggcccgcgaccgccgtgtccgcgcgggtgcggctg
gccgccgtcatcgacgaggacacggcccgcgccgccgccgcgcatctgctcgtctccggc
gaagaggtgcgctgggaggacggtgacgtcgtcgccagggacgtgacgcggctcggcgcc
gtcgaactctccgcgcggccgctgcgcaagcccgacccggcacgggtgcgggctgcgctg
ctggacggtctgcgccgcgagggcccaggcgcgctgctgcgctggacgcgggacgccgag
gcgctgcgggagcgactgggctttctgcaccgcgcgttgggcgccccgtggccggacgtc
tcggacgcggcgctgctcgacggcgccgacgactggctggagcccgagctgtcgaaggcc
cggcgccgcgcggatctggcccggatcgaggcgggtcaggcgctgcggcgtctgctgccg
tggtcctcgggtcaggcggggcggctggacgagctggcccccgagcggatcctggtgccg
agcgggtcgcgcgtacgtgtcgactacggcggggagcagcccgtactggcggtgaaactc
caggagttgttcggtctgacggcgacaccgacggtcgcgggggtgccggtgctggtccat
ctgctctcccccgccgggcgccccgcggcggtcaccgcggacctggcgtccttctggcgg
gagggctaccgcgccgtacgcgcggagctgcgcggtcgctatccgcggcacccgtggccg
gaggacccgacgcaggcggtggcgacgcgccggctgaacgaccggcgctga
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