Streptococcus pneumoniae OXC141 (serotype 3): SPNOXC13920
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Entry
SPNOXC13920 CDS
T02074
Name
(GenBank) DEAD box helicase family protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
snx
Streptococcus pneumoniae OXC141 (serotype 3)
Pathway
snx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPNOXC13920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snx03019
]
SPNOXC13920
03009 Ribosome biogenesis [BR:
snx03009
]
SPNOXC13920
Enzymes [BR:
snx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SPNOXC13920
Messenger RNA biogenesis [BR:
snx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SPNOXC13920
Ribosome biogenesis [BR:
snx03009
]
Prokaryotic type
rRNA helicases
SPNOXC13920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
DUF6363
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CBW33045
LinkDB
All DBs
Position
complement(1411708..1413282)
Genome browser
AA seq
524 aa
AA seq
DB search
MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL
EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGA
HIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLF
SATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQPE
LAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQIIENLTKK
RMKGLKPASVEESFQSKKQVALKKIERDFADETIRANFEKFGKDARKLAAEFTPEELAMY
ILSLTVQDPDSLPEVEIAREKPLPFKPSGNGFGGKAKGGRGGRRGDDRRERDRRGNGRRD
EFKKGSRGNDRFDKEKRYRKDNKKPRNTLSEKQTGFVIRNKGDK
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatttaatgaattaaacttgtctgctgatttgctagcagaaattgaaaaagctggt
tttgtagaagctagtcctatccaagaacaaactattcctttggcccttgaaggcaaggat
gttatcggtcaagctcagactggtacaggaaaaactgcagcctttggcttgcctaccctt
gaaaaaatccgtacagaagaagcgactatccaagctttggtcatcgctccaactcgtgaa
ctagctgttcaaagtcaagaagaactcttccgctttggtcgtagtaagggagtcaaagtc
cgttcagtatatggcggatcaagcattgaaaaacaaattaaggctcttaaatctggtgcc
catatcgtggtgggaactccaggtcgcctcttggacttgattaaacgcaaggccttgaaa
ttacaagacattgaaacccttatccttgacgaagcggatgaaatgcttaacatgggcttc
cttgaagacatcgaagccattatttcccgtgtacctgagaaccgtcaaactttgcttttc
tcagcaactatgccagatgccatcaaacgtatcggtgttcagtttatgaaagcccctgaa
catgtcaagattgcggctaaggaattgacaacagaattggttgaccagtactatatccgt
gttaaggaacaagaaaaatttgacaccatgactcgtctcatggatgtggcacaaccagaa
ctcgctattgtatttggtcgtaccaaacgccgtgtggatgaattgactcgtggtttgaaa
attcgtggcttccgtgcagaaggaattcatggcgacctagaccaaaacaaacgtcttcgt
gtccttcgtgactttaaaaatggcaatcttgatgttttggttgcgacagacgttgcagcg
cgtggtttggatatttcaggtgtgacccatgtctacaactacgatattccacaagatcct
gagagttatgttcaccgtatcggtcgtacaggtcgtgctggtaagtcaggtcaatctatt
acttttgtttctccaaacgaaatgggttaccttcaaatcattgaaaacttgactaagaaa
cgcatgaaaggtctcaaacctgcaagtgtagaagaatccttccaatcaaaaaaacaggta
gctctcaagaaaatcgaacgtgattttgcagatgaaaccattcgtgccaactttgagaaa
tttggtaaggatgctcgcaaattggctgctgagtttactccagaagaattggcaatgtat
atcttgagtctgacagtccaagatccagatagccttccagaagtggagattgcacgtgaa
aaaccactaccgtttaaaccatcaggtaatggtttcggtggtaaagctaagggaggtcgt
ggaggccgtcgtggggacgaccgtcgagagcgtgatcgccgtggcaatggtcgccgtgat
gagttcaaaaaaggaagtcgtggcaacgatcgttttgataaggaaaaacgttaccgtaag
gataataaaaaaccacgcaatactttaagcgaaaagcaaacaggctttgttattcgtaac
aagggcgataaataa
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