Candidatus Schneideria nysicola: KEC38_01815
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Entry
KEC38_01815 CDS
T07486
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sny
Candidatus Schneideria nysicola
Pathway
sny03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sny00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KEC38_01815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sny03019
]
KEC38_01815
03009 Ribosome biogenesis [BR:
sny03009
]
KEC38_01815
Enzymes [BR:
sny01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KEC38_01815
Messenger RNA biogenesis [BR:
sny03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KEC38_01815
Ribosome biogenesis [BR:
sny03009
]
Prokaryotic type
rRNA helicases
KEC38_01815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
ABC_membrane
RNase_P-MRP_p29
Motif
Other DBs
NCBI-ProteinID:
UAJ65892
LinkDB
All DBs
Position
complement(362771..364396)
Genome browser
AA seq
541 aa
AA seq
DB search
MSEKEISFSSLGLSQFILQALNDLGYTHPSPIQAKCIPYLLIGRDILGTAQTGSGKTAAF
SLPLIQNINPEFNAPQVLILTPTRELAVQVGEACSHFSKYIKNIKTIVLYGGQNYTIQIR
ALQMGAQIIVGTPGRLLDHLNRGTLNLSSLRSLVIDEADEMLRMGFIESVEDILKKIPKE
HQTALFSATMPESIRLITHRFMKKPYEIGIQTSIKTRPDIRQSYCKIQKGISKYELLSRF
LEIEDFDAVLIFVRTKIATIQVAKVLEKNGYHNIAVLNGDMTQSLREQTLKHFRDGQLNI
LIATDIAARGLDVDRISLVINYDLPTDSESYIHRIGRTGRAGRIGRALLFVEPHEKYRLR
NIERTIKITIPEVKPPTSDMLITRRLEKFSEKLEKLLSSDDIDAYRNLLKKLINLPIFEK
KSDTLSAILLKLAQGNRPLILPPDPINIKKIKNNHSIKKISKDMNLYRIGVGRHDGIEVH
HILNIFSKKVDIKSQYIGRIKLFDYYSTIELSKSIPINKILNLSGIRLLNKTMKIRIVGV
N
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaaggaaatatctttttcttcattaggattatcacagtttattctacaagca
ttaaatgatctcggttatacgcacccctctcctatacaagcaaaatgtattccatattta
ctcattggtagagatatactcggtactgcacaaactggtagtggtaaaactgcggctttt
tccttaccattaattcagaatattaatccagaattcaatgcgccacaagtacttattctt
acacctactagagaattagcagtacaagttggagaggcatgttcccatttttctaaatat
ataaaaaatattaaaacaattgtcctatatggaggacaaaattataccattcaaatacgt
gctttacaaatgggtgctcaaataattgtaggtactcctggtcgtttacttgatcattta
aatagaggaacactaaatttatcttctttacgtagcttagtcatagatgaagcagatgaa
atgctacgtatgggttttattgaatctgttgaagatattttgaaaaaaatacccaaagaa
catcaaacagcattattttctgcaacaatgcctgaatcaattcgattgattacacatcgt
tttatgaaaaaaccttatgaaatagggattcagacgagtattaaaactcgtcctgatata
cgtcaaagctattgtaaaatacaaaagggtatatctaaatatgaattattatctcgattc
ttggaaatagaagattttgatgcggtattaatttttgtacgtactaaaattgctacaata
caagtagctaaagtcttggaaaagaacggatatcataatattgctgtattaaatggagat
atgactcaatcactacgtgaacaaactctaaaacattttagagacggtcaattaaatatt
ttaattgctaccgatattgcggctagaggtttagatgtagatagaattagtttagttata
aattatgacttacccacagattcggaatcctatattcatcgtattggtagaacaggacgt
gctggacgcattgggagagcattattgtttgtagaacctcacgaaaaatatagattacgt
aatatagaacgtactataaaaatcactattcctgaagttaaacctcctacatccgatatg
cttattacgagacgtttagaaaaattttctgagaaacttgaaaagttattatcatcggat
gatatagatgcttatcgtaatttattaaagaaattgataaatttacccatttttgaaaaa
aaatcagatactttatctgcaatactactcaaattagcgcagggaaatcgtcctttaatt
ttaccacccgatcctataaatataaaaaaaataaaaaataatcatagtataaaaaaaata
agtaaagatatgaatttatatcgaattggagtaggtcgtcatgatggtattgaagtccat
catattcttaatattttttcgaaaaaggtagatatcaaaagtcaatatattggtcgtatt
aagttatttgattattattcaacgattgagttatccaaaagtattcctattaataaaata
ttaaatcttagcggtatacgtttattaaataaaactatgaaaataaggatagtaggggta
aattaa
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