Candidatus Schneideria nysicola: KEC38_01955
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Entry
KEC38_01955 CDS
T07486
Symbol
mrdA
Name
(GenBank) peptidoglycan DD-transpeptidase MrdA
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
sny
Candidatus Schneideria nysicola
Pathway
sny00550
Peptidoglycan biosynthesis
sny01100
Metabolic pathways
sny01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
sny00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
KEC38_01955 (mrdA)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
KEC38_01955 (mrdA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
sny01011
]
KEC38_01955 (mrdA)
Enzymes [BR:
sny01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
KEC38_01955 (mrdA)
Peptidoglycan biosynthesis and degradation proteins [BR:
sny01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
KEC38_01955 (mrdA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
Motif
Other DBs
NCBI-ProteinID:
UAJ65915
LinkDB
All DBs
Position
complement(388912..390774)
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AA seq
620 aa
AA seq
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MIKKESIRNHLAESTLFLHRILIAIFVILLLNGILISNIYYLQIICFEKYRARSNENRIK
ILPLFPNRGMIYDRNGIPLALNRTIYQLEIIPEKIKDINKTVNDLQSIMDITVEDIMHFE
KERKRARRFSSIPIKGNLSEIQHAIFSINQFHFPGVEIKSYQRRYYPYNTILTHAIGYVS
KMNLSEIKNFQPKGLLSHSINNYDIGKLGIERYYEPILRGKMGYKEIEVNNYGKIIRQLR
KKLPYPGKNIYLTLDIHLQCYVQKLLMNSRGAVIVVDPQDGGILSLVSNPSYNPNLFVEG
ISKKDYLGLIKDENCPLINRVTQGLYPPASTVKPYISVSAMTLGIINKNFSLFDPGWWKL
PNSEKRYRDWKRCGHGQINVTKAIEESADTFFYQIAYDLGIDRLSEWMKKFGYGQYTGID
LLEESMGVMPNRDWKKHRFKKPWYQGDTIPVGIGQGYWTATPIQMSKALMALINNGLLRT
PHLLLGIQDHEGIKPYKQHSCSQIGDPYSIFWKIVKDGMYGVANRPNGTAYRNFFNAPYK
IAAKSGTAQVYSLKKNEFYNAKKVSNKLRDHKLMIAFAPYDKPRVGVVVILENGSGDLTA
GSVTRKIMDYIFIQENNLNK
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaaaagaatcgatacgaaatcatttagctgaatcaacattatttttacaccgt
atattaatagctatttttgtaattttattactcaatggaattttaatatctaacatatat
tatcttcaaattatttgttttgaaaaatatagagctcgttccaatgaaaatagaattaaa
attctgccactttttccgaatcgtggaatgatatatgatcgtaatggtataccactcgca
ttaaatcgtacaatttaccaattagaaattataccggaaaaaattaaagacataaataag
acagtaaatgatctacaatccattatggatataactgtagaagatataatgcattttgaa
aaagaaagaaaaagagcaagacgtttttcctccatccctattaaagggaacttaagtgaa
attcaacacgctattttttctattaatcaatttcattttcctggtgtagagataaaaagt
tatcaacgtcgttactatccatataatactattttaactcatgctattggttatgtttca
aaaatgaacctttcagaaataaaaaatttccaacctaaaggattattaagtcattctatt
aataattacgatattggtaaattagggattgaacgttactatgaacccattttaagggga
aaaatgggttataaagaaatagaagttaataattacggtaaaatcatacgacaattaaga
aaaaaactaccttatcccggtaaaaatatctatcttacattagatattcatctgcaatgt
tatgttcaaaaattactaatgaatagtagaggtgccgttattgttgttgatcctcaagat
gggggtatattatcgcttgtatctaatcctagttataatcctaatttatttgtagaaggt
atctctaaaaaggattatctaggtttaataaaagatgaaaactgtcctttaattaatcgt
gttacacaaggattgtatcctcctgcttctacagttaaaccatatatatctgtatcagca
atgacacttggtattattaataaaaatttttcattatttgatccaggatggtggaaatta
cctaattcagaaaaaagatatagggattggaaaagatgtgggcatggtcaaattaatgtg
actaaagcaattgaggaatcagcggatacctttttttatcaaatagcttatgatttaggt
attgatcgtttatcagaatggatgaaaaaatttggatatggtcaatacacaggtattgat
cttttagaggaatctatgggagtaatgcccaatagagattggaaaaaacatcgttttaaa
aaaccttggtatcaaggagataccattccagttggaataggacaaggttattggacagca
actccaattcaaatgtcaaaggcacttatggctttaattaacaatggattattacgtact
ccacatctattattagggatacaagatcatgaaggtataaaaccttataaacaacattct
tgtagtcaaataggagatccttattctattttttggaaaatagtaaaagacggaatgtac
ggtgttgctaatcgacccaatgggacagcatatagaaatttttttaatgccccttataag
atagctgcaaaatctggtactgcccaagtttatagtttaaaaaaaaatgaattttataat
gctaaaaaagtttctaacaagttaagagatcataaactaatgattgcttttgctccatat
gataaacctagagtaggagtagtagtcattttagaaaatggtagtggtgacttaacggcc
ggttcggtaactagaaaaattatggattatattttcattcaagaaaacaatctaaacaaa
taa
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