Candidatus Schneideria nysicola: KEC38_02915
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Entry
KEC38_02915 CDS
T07486
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sny
Candidatus Schneideria nysicola
Pathway
sny03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sny00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KEC38_02915 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sny03019
]
KEC38_02915 (rne)
03009 Ribosome biogenesis [BR:
sny03009
]
KEC38_02915 (rne)
Enzymes [BR:
sny01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KEC38_02915 (rne)
Messenger RNA biogenesis [BR:
sny03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KEC38_02915 (rne)
Ribosome biogenesis [BR:
sny03009
]
Prokaryotic type
rRNA processing factors
KEC38_02915 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UAJ66066
LinkDB
All DBs
Position
complement(569083..571539)
Genome browser
AA seq
818 aa
AA seq
DB search
MKRMLINATQKEELRIALVDGQKLYDLNIEVPGHEQKKSNIYKGRVSRIEPSLEAAFIDY
GTEKHGFLPLKEIAKEYFPSQYSYVGKPNIKEILREGQEIIVQVHKEERSNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGNDRTELKDVLSSLQLPSGMGLIARTAGIGKSTEVL
QWDLTFRLKHWEAIKKSAENHTAPFLLHQESDVIVRAFRDYLRPDISEILIDDIKILNLA
KQHITALGRPDLTHKIRLYSGEVPLFSHYQIESQIESAFQREVRLPSGGSIIIDTAEALT
AVDINSSRSTRGGDIEETAFTTNLEAVNEIARQLRLRDLGGLVVIDFIDMTPIRHQREIE
NCLREAVRQDRARIQIGRISRFGLLEISRQRLSPSLGESSHHICPRCSGTGSIRDNESLS
LSILRLIEEEALKENTHEVHAIVPVPIASYLLNEKREAVNAIEKRQGGVRAIIVPNDQMR
TPNYTVLRIRKGEESSSTLSYLLPQLHEAEINPFAHHQNASIEKNNKRYSPFSTLSNSQE
KISHKERENKKILKIILEKLFYNYKFFIRIKYLIYKIIQKIIAQINKRKKLKDSKIRKHS
IDDYKQKKEKDSYNDLIRKKKHNSINTHNIHINNQSNSIKHSSIKHKFDKSLEYSRLSIP
SEGIQNTSIKKEERKNKKKCKIVHTVSNNTKQNIIDNTMKIENHTEEDTTTRVIKIRNNN
EDRISKETKNNLIKDENKDENIVNITLNNKKIKIQKNKDTKNNIHLSNRLRRSPRHIRFY
NRRRYSHTKNQSIPSQSSSIVTSSINSNENTSINQKTS
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaatgctactcaaaaggaagagttacgtatagctttagtagat
ggtcaaaaattatatgatttaaacattgaagtcccaggacatgaacaaaaaaaatctaat
atttataaaggaagagtatcacgtatagaaccaagtttagaagcggcttttattgattat
gggacagaaaaacatggatttctacctttaaaagaaattgctaaagagtattttccctca
caatattcttatgttggaaaacctaatattaaagaaatattacgggaaggacaagaaata
attgtgcaagttcataaagaagaaagaagtaacaaaggtgcagctcttacaacttttata
agtttagcaggtagttatctagtattaatgccaaataatccacgtgcaggtggtatttct
aggcgtattgaaggaaatgatagaacagaattaaaggacgtattatcttctcttcaatta
ccaagtggtatgggattaattgctcgtactgctggtattgggaaatctactgaagtacta
caatgggatttaacatttcgtttaaaacattgggaagcaattaaaaaatcagctgaaaat
catactgctccatttcttcttcatcaagaaagtgatgtgattgtacgagcatttcgtgat
tatttacgaccagatattagcgaaattttaattgatgatattaaaatattaaatttagca
aagcagcatattactgctttgggtcgtccagatcttacgcataaaattcgattatatagt
ggagaagtaccattatttagtcattatcaaattgagtcacaaattgaatctgcatttcaa
agagaagtacgtctcccttctggtggatcaattattattgacactgcagaagcacttact
gcggttgatattaattcctctcgctcaacacgaggtggagatatagaagaaactgctttt
actactaatctagaagctgtcaatgaaatagctcgtcaattaagactacgtgatttagga
ggattggttgttattgattttattgatatgactcccattcgacatcaaagagagatagaa
aattgtttacgagaagcagtccgacaagatcgtgctcgtattcaaattggtcgtatttct
cgatttggtttattagaaatttctcgtcaacgtcttagtccatctcttggtgaatcgagt
catcatatttgtccacgctgtagtggaacgggaagtattcgtgataatgaatctttgtct
ttatcaatcttacgtcttatagaagaagaagcattaaaggagaatacccatgaggttcat
gctattgtcccagtacctatagcttcttatctactgaatgaaaaaagagaagcagtaaat
gctatagaaaagcgtcaaggtggagtacgtgcgattattgtaccaaatgatcaaatgaga
acacccaattatacggttcttcgaattcgtaagggagaagaatcttcttctactttaagc
tatcttttacctcaattacatgaagcagaaataaatccttttgctcatcatcaaaatgca
tcaatagaaaaaaataataaacgttactctccattttccacattaagcaattctcaagaa
aaaatttctcataaagaaagagaaaataaaaaaatattaaaaataatattagagaaatta
ttttataattataaattttttataagaataaaatatttgatatataaaatcattcaaaaa
ataatagcgcaaatcaataaaagaaaaaaattaaaagattcaaaaattagaaaacattct
atcgatgattataaacaaaaaaaagaaaaagattcttacaatgatctgattcggaaaaaa
aaacataattcaattaatactcataatattcatattaataatcaaagtaatagtatcaag
catagtagtatcaaacataaatttgataaaagtctagaatattctagactatcaatacct
tcagaagggatacaaaatacttctataaaaaaagaagaaagaaaaaacaaaaaaaaatgt
aaaatagttcatactgtatctaataatacaaagcaaaatatcatagataatacaatgaaa
atagaaaatcatacagaagaagatactactactcgtgtgataaaaattcgtaataataat
gaagatagaatttctaaagagacaaagaataatcttattaaggatgagaataaggatgag
aatattgttaatataacattaaataataaaaaaataaaaatacaaaaaaataaggatact
aaaaataatatccatttatctaatagattaagacgttcacctagacatattcgattttat
aatcgtagacgttattctcataccaaaaatcaatctataccatcacaatcttcttctata
gttacttcttctataaatagtaatgagaacacttctatcaatcagaagacgtcctaa
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