Streptomyces nigra: DC008_08295
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Entry
DC008_08295 CDS
T05839
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
snz
Streptomyces nigra
Brite
KEGG Orthology (KO) [BR:
snz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snz03019
]
DC008_08295 (hrpB)
Enzymes [BR:
snz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DC008_08295 (hrpB)
Messenger RNA biogenesis [BR:
snz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DC008_08295 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
ResIII
AAA_22
AAA_19
AAA_30
CON_HrpB
Helicase_RecD
HA2_N
Rv0078B
Motif
Other DBs
NCBI-ProteinID:
AWE49719
LinkDB
All DBs
Position
1779282..1781762
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AA seq
826 aa
AA seq
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MIRYDALDALPVRGALPALTDALEGPGTAVLVAPPGTGKTTLVPLALAGLLGEGPVRRVV
VAEPRRIAARAAARRMAWLLGERPGESVGHTVRGERVVGPRSRVEVVTTGVLLQRLQRDP
ELAGVDVVVLDECHERHLDADTAAAFLWDVRETLRPELRLVAASATTDAEGWAGLLGGAP
VVVAEGAAHPVETVWVPPSRPVRPPHGTRVDPVLLAHVASVVRRALAERPGDVLCFLPGV
GEIARVAGQLGDLGDAEVLQVHGRAPAAVQDAVLSVGERRRVVLATSVAESSLTVPGVRV
VVDSGLAREPRVDHARGLSALTTVRASQAAGRQRAGRAGREAPGAVYRCWAEAEDARLPR
FPAPEIKVADLTAFALQAACWGDPDAAGLALLDAPPAGAMAAARSVLTAVGAVDGDGRAT
ERGTALARLGLHPRLGRALLDGPDAAAEVVALLSEEPPREYGDDLGAALRAARRGGDGYA
GRWRAEVRRLRAGAGTRGGQGAPDDRTVGHVAALAFPERVAKADGGSYLMASGTRAELAE
GSPLRGAPWIAVAVADRPVGRGHARVRLAAVIDEATARSAAASLHREGEEVHWADGDVVA
RRVERLGAIELAERPLPGADPALVRAALLDGLRREGFGLLRWSPDAVVLRQRLAFLRLHR
GDPWPDVSDEALHARVDEWLEPELGRARRRADLGRIDAGQALARLLPWATGEAGRLDELA
PERVTVPSGSRIRVDYGDPERPVLAVKLQEMFGLDASPAVAGVPLLVHLLSPAGRPAAVT
ADLASFWRDGYRGVRAELRGRYPKHPWPEDPASAEPTRHTNARLRR
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
gtgatccgttacgacgccctggacgcgctgccggtgcgcggcgccctgcccgcgctgacc
gacgccctggaggggcccggcaccgccgtgctggtcgccccgccgggtaccggcaagacg
acgctggtgccgctggcgctcgcgggcctgctcggtgaggggcccgtacggcgggtcgtg
gtcgccgagccgcgccggatcgccgcgcgggcggcggcccggcggatggcgtggctgctg
ggcgagcggcccggggagagcgtcggtcacaccgtgcgcggcgagcgggtcgtgggcccc
cggagcagggtggaggtcgtgacgaccggggtgctgctgcagcggctccagcgcgacccg
gagctggcgggcgtggacgtggtggtgctcgacgagtgccatgagcggcatctggacgcg
gacacggcggcggcgttcctgtgggacgtccgggagacgctgcggccggagctgcggctg
gtggccgcgtcggcgacgacggacgcggagggctgggccgggctgctgggcggcgcgccg
gtcgtcgtggccgagggcgccgcacatccggtggagacggtgtgggtgccgccgtcgcgt
ccggtgcggccgccgcacgggacgcgggtcgatccggttctgctcgcgcatgtggcctcg
gtggtgcggcgggcgctggcggagcggccgggtgacgtgctgtgttttctgccgggggtc
ggggagatcgcgcgggtcgccgggcagctcggggatctcggggacgcggaggtcctccag
gtgcacgggcgggcgccggcggccgtgcaggacgcggtgctgtccgtcggggagcggcgc
agggtggtgctggcgacgtccgtggcggagtcctcgttgacggtccccggggtgcgggtc
gtcgtcgattccgggctggcgcgtgagccccgcgtggatcacgcgcgcgggctgagcgcg
ctgacgacggtacgggcctcgcaggccgccggacggcagcgggcgggccgggccgggcgt
gaggcgccgggggcggtgtaccggtgctgggccgaggcggaggacgcgcggctgccccgt
ttcccggcgccggagatcaaggtggccgatctgacggcgttcgcgttgcaggcggcctgc
tggggcgatccggacgcggccgggctggctctgctggatgcgccgccggccggggcgatg
gcggcggcacggagcgtgctgacggccgtgggggcggtggacggcgacgggcgggcgacc
gagcggggcacggccctggcccggctcggtctgcaccccaggctgggccgggccctgctg
gacggcccggacgcggccgccgaggtggtggcgctgctcagcgaggagccgccgcgcgag
tacggcgacgatctgggggcggcgctgcgggctgcccggcggggcggcgacggctatgcc
gggcgctggcgggcggaggtgcggcggctgcgggcgggcgccggcacccgcggcggccag
ggcgcccccgacgaccgcacggtggggcacgtcgccgcgctggcgttccccgagcgggtg
gcgaaggcggacggcgggtcgtatctgatggcgtccggcacgcgcgcggagctcgccgag
ggcagtccgctgcggggcgccccctggatcgcggtggcggtcgccgaccggccggtgggg
cgcgggcacgcgcgtgtgcgcctcgcggccgtcatcgacgaggcgacggcccgctcggcg
gcggcctccctgcaccgggagggtgaggaggtgcactgggcggacggcgatgtggtggcc
cggcgggtcgagcggctcggcgcgatcgagctggcggagcgccccctgcccggcgccgac
ccggccctcgtacgggccgctctgctcgacgggctgcggcgagaggggttcgggctgctg
cgctggtccccggacgccgtggtgctgcggcagcggctggcgttcctgcggctgcaccgg
ggcgatccatggccggacgtgtcggacgaggcgctgcacgcgcgcgtggacgagtggctg
gagcccgagctgggccgggcccggcggcgggcggacctcgggcggatcgacgccgggcag
gccctggcgcggctgctgccgtgggccacgggcgaggcggggcgcctggacgaactggcc
ccggaacgtgtgaccgtgcccagcggctcgcggatccgggtggactacggcgatccggag
cggcccgtgctggccgtgaagctgcaggagatgttcgggctggacgcctcgccggcggtg
gccggggtgccgctgctggtgcatctgctctcccccgccgggcgtccggccgccgtgacc
gccgatctcgcctcgttctggcgggacggctaccggggtgtgcgggcggagctgcgcggc
cgttatccgaagcatccgtggccggaggacccggcgtccgccgagccgacccggcacacc
aacgcgcggctcaggcggtga
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