Streptomyces nigra: DC008_08680
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Entry
DC008_08680 CDS
T05839
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
snz
Streptomyces nigra
Pathway
snz03030
DNA replication
snz03430
Mismatch repair
snz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
snz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DC008_08680
03430 Mismatch repair
DC008_08680
03440 Homologous recombination
DC008_08680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
snz03032
]
DC008_08680
03400 DNA repair and recombination proteins [BR:
snz03400
]
DC008_08680
Enzymes [BR:
snz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DC008_08680
DNA replication proteins [BR:
snz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DC008_08680
DNA repair and recombination proteins [BR:
snz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DC008_08680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
Motif
Other DBs
NCBI-ProteinID:
AWE49792
LinkDB
All DBs
Position
complement(1866717..1870256)
Genome browser
AA seq
1179 aa
AA seq
DB search
MSKPPFTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMSDHGNLHGAYDFFHSAQKA
GITPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTMWAVNSTGLHNLFRL
SSDAYAEGWLQKWPRMDKETISQWSEGIVASTGCPSGEVQTRLRLGQFDEALKAAADYQD
IFGKDRYFLELMDHGIDIEHRVRDGLLEIGRKLGIPPLVTNDSHYTYAHEATAHDALLCI
QTGKNLSDPDRFKFDGTGYYLKSTDEMYAIDSSDAWQEGCANTLLIAEMVDTTGMFEKRD
LMPKFDIPEGYTEVTWFKEEVRRGMERRFPGGIPEDRQKQADYEMDVIISMGFPGYFLVV
ADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNPERISMPDVDI
DFDERRRVEVIRYVTEKYGADKVAMIGTYGTIKAKNAIKDSARVLGYPYAMGDRITKAMP
ADVLGKGIPLSGITDPSHPRYSEAGEVRAMYENEPDVKKVIDTARGVEGLVRQMGVHAAG
VIMSSETITEHVPVWVRHTDGVTITQWDYPSCESLGLLKMDFLGLRNLTIMDDAVKMVKS
NKGIDIDLLSLPLDDPTTFELLQRGDTLGVFQFDGGPMRSLLRLMKPDNFEDISAVSALY
RPGPMGMNSHTNYALRKNGQQEITPIHKELEEPLREVLDVTYGLIVYQEQVQKAAQIVAG
YSLGEADILRRVMGKKKPEELAKNFTIFQAGARKNGYSDEAIQALWDVLVPFAGYAFNKA
HSAAYGLVSYWTAYLKANHPAEYMAALLTSVKDDKDKSAVYLNECRRMGIRVLPPNVNES
VHNFAAQGDDVILFGLEAVRNVGTNVVESIIKSRKAKGKYSSFPDYLDKIDAAACNKRTT
ESLIKAGAFDSLGHTRKGLTAHFEPMIDNVVAVKRKEAEGQFDLFGGMGEEQSDEPGFGL
DVQFTDEEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGIAQLTGGEHSDGAVV
TIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFPATYQLVSTQLVEDAVVFVKGRL
DKREDVPRLVAMELQVPDLSNAGANAPVILTIPATRVTPPMVSRLGEILSHHRGESEVRI
KLQGPTKTTVLRLDRHRVKPDPALFGDLKVLLGPSCLAG
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgaagccgccgttcacgcacctgcacgtccacacccagtactcgctgctggacggt
gccgcgcggctgaaggacatgttcaacgcctgcaacgagatgggcatgacccatatcgcc
atgtccgaccacggcaacctgcacggggcgtacgacttcttccactccgcgcagaaggcc
gggatcaccccgatcatcgggatcgaggcgtatgtcgcccccgagtcccggcgcaacaag
cgcaagatccagtggggccagccgcaccagaagcgcgacgacgtctccggttccggtggc
tacacccacaagacgatgtgggccgtgaacagcacggggctgcacaacctcttccggctc
tcctccgacgcctacgccgagggctggctgcagaagtggccccggatggacaaggagacc
atctcgcagtggtccgaggggatcgtggcctccaccggctgcccctccggcgaggtgcag
accaggctgcggctcggccagttcgacgaggccctgaaggccgccgccgactaccaggac
atcttcggcaaggaccggtacttcctggagctgatggaccacggcatcgacatcgagcac
cgggtccgcgacggcctgctggagatcggcaggaagctcggcatcccgcccctggtgacg
aacgactcgcactacacgtacgcgcacgaggcgaccgcccacgacgccctgctgtgcatc
cagaccggcaagaacctctccgacccggaccgcttcaagttcgacggcaccggctactac
ctgaagtccacggacgagatgtacgccatcgactcctcggacgcctggcaggagggctgc
gccaacaccctgctgatcgccgagatggtcgacaccacgggcatgttcgagaagcgcgac
ctcatgcccaagttcgacatccccgagggctacaccgaggtcacctggttcaaggaggag
gtccgccgcggcatggagcgccgcttcccgggcggcatccccgaggaccgtcagaagcag
gccgactacgagatggacgtcatcatctcgatgggcttccccggctacttcctcgtcgtg
gccgacttcatcatgtgggccaagaacaacggcatcgcggtcggccccggccgaggctcc
gcggccggttcgatcgtcgcgtacgccatgggcatcaccgacctcgaccccatcccgcac
ggcctgatcttcgagcggttcctcaaccccgagcgcatctccatgcccgatgtcgacatc
gacttcgacgagcgccggcgcgtcgaggtgatccggtacgtgacggagaagtacggcgcc
gacaaggtcgccatgatcggcacctacggcaccatcaaggccaagaacgcgatcaaggac
tccgcgcgcgtgctgggctacccgtacgcgatgggcgaccgcatcaccaaggcgatgccc
gccgacgtcctcggcaagggcatcccgctctccggtatcacggacccgagccacccccgg
tactcggaggcgggcgaggtccgcgcgatgtacgagaacgaaccggacgtgaagaaggtc
atcgacaccgcgcgcggcgtggagggcctggtccggcagatgggtgtgcacgccgccggc
gtgatcatgtccagcgagaccatcaccgagcacgtgcccgtctgggtccggcacaccgac
ggcgtgaccatcacgcagtgggactacccgagctgcgagtcgctcggcctgctgaagatg
gacttcctcggcctgcgcaacctgacgatcatggacgacgccgtcaagatggtgaagtcc
aacaaggggatcgacatcgatctcctcagcctcccgctggacgaccccacgaccttcgaa
ctgctccagcgcggcgacaccctcggcgtcttccagttcgacggcggccccatgcgctcg
ctgctgcgtctgatgaagccggacaacttcgaagacatctccgccgtgtcggccctgtac
cgcccgggccccatgggcatgaactcccacacgaactacgcgctgcgcaagaacgggcag
caggagatcacgcccatccacaaggagctcgaggagcccctgcgggaggtcctggacgtc
acctacggcctgatcgtctaccaggagcaggtgcagaaggccgcccagatcgtcgccggc
tactcgctcggcgaggccgacatcctccgccgggtgatgggcaagaagaagcccgaggaa
ctggcgaagaacttcacgatcttccaggccggcgcccggaagaacggctacagcgacgag
gccatccaggcgctgtgggacgtgctggtcccgttcgccggctacgcgttcaacaaggcg
cactcggccgcgtacggcctggtgtcgtactggaccgcctacctcaaggcgaaccacccc
gccgagtacatggcagcgctgctcacgtccgtcaaggacgacaaggacaagtccgcggtc
tatctcaacgagtgccggcgcatgggcatccgcgtgctcccgccgaacgtcaacgagtcc
gtgcacaacttcgccgcccagggcgacgacgtgatcctcttcggcctggaggccgtccgc
aacgtcggcaccaacgtcgtcgagtcgatcatcaagagccgcaaggcgaaggggaagtac
tcctccttccccgactacctcgacaagatcgacgcggccgcgtgcaacaagcggaccacc
gagtcgctgatcaaggcgggcgcgttcgacagcctcgggcacacccgcaagggcctcacc
gcccacttcgagccgatgatcgacaacgtggtggcggtcaagcgcaaggaggccgagggc
cagttcgacctcttcggcgggatgggcgaggagcagagcgacgagcccggcttcggactc
gacgtgcagttcaccgacgaggagtgggacaagacctatctgctcgcccaggagcgggag
atgctcggtctgtacgtctccgaccacccgctgttcggtctggagcacgtgctgtccgac
aaggcggacgcgggcatcgcccagctcaccggcggagagcactccgacggcgcggtcgtc
accatcggcggcatcatctcgggcctccagcgcaagatgaccaagcagggcaacgcctgg
gcgatcgccacggtcgaggacctcgcgggctccatcgagtgcatgttcttcccggcgacc
taccagctcgtctcgacccaactcgtcgaggacgccgtggtgttcgtcaagggccgcctc
gacaagcgcgaggacgttccgcggctcgtcgcgatggagctgcaggtgcccgacctctcc
aacgcgggcgccaacgcgccggtgatcctcaccatcccggccacgcgggtcaccccgccg
atggtcagccggctcggcgagatcctcagccaccacaggggcgagagcgaggtccgcatc
aagctccaggggccgaccaagacgacggtgctgcgcctcgaccggcaccgggtgaagccc
gatccggcgctgttcggcgacttgaaggtgctgctcggcccgtcctgcctggccggctga
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