Streptomyces nigra: DC008_11210
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Entry
DC008_11210 CDS
T05839
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
snz
Streptomyces nigra
Pathway
snz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DC008_11210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snz03019
]
DC008_11210
03009 Ribosome biogenesis [BR:
snz03009
]
DC008_11210
Enzymes [BR:
snz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DC008_11210
Messenger RNA biogenesis [BR:
snz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DC008_11210
Ribosome biogenesis [BR:
snz03009
]
Prokaryotic type
rRNA processing factors
DC008_11210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AWE50234
LinkDB
All DBs
Position
complement(2423115..2427122)
Genome browser
AA seq
1335 aa
AA seq
DB search
MLEPTEATESSTGSELNTPSDTLPPRRRRRAASRPAGPPAATETQPAEVVEPAIPPADVE
KLDQEQADLEAETAEAEEAAEVEETPEPAPPARTRRRAVRRASAPAGAPAAEAAAETVVP
VTAAEPVAEEPAQAAAEASEVPEVSEEPAPPRARRRATRRVTAPAAAPAPAQDAEATETA
EGDAMDHEAAAVEETPEPAPRRTRRRATRTAAAPEAVQAAPADEEPVTAEEPAQAEASTE
SAEAEEAAPRRTRRRATRRTAAPAAVEEAAAETVEAAPEETAGTPVTAETPVTEGVETES
PAATAAAAEDDAAPRRRRRAVRRAATGFAEPARSASGAAADEAPRPSRPAVAVFQAPVFT
EPQFQTPQRAAAEAAAEAVTEDDEELREEQPVAPRRRRRRRGEDPEPQAAVEPAAEDESD
ETEDGAEDSADGDESEETGSRRRRRRGGRRRRRGDSGEQDAEGESDSEDTAAAQAEQDAE
DTAEQEEEDAEEAHDDSSGSGSSSSRRRRRRRRRAGDSSVDAEPGDGDPERTVVKVREPR
PKSEPSDEVQSIKGSTRLEAKKQRRREGREQGRRRVPIITEAEFLARREAVERVMVVRQH
GDRTQIGVLEDNVLVEHYVNKEQSTSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVLYA
GEVNFEALGMANGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEG
SMTGISRKLPDTERARLKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQGQWEEIR
KKAKSGNAPTLLYGEPDMTVRVVRDIFNEDFSKVVVSGDEAWETIHGYVSHVAPDLAERL
QRWTSEVDVFATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGKFTGQGGNL
EETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQ
VAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPTSAGGGGGGKRKKRAR
AGAGPEHVHEASVATEPVETAEEEAESEAEVAAEVAEPTALAEPAFAPDEELYSSVAEAE
AAARSGRSRRRGGRRASAPAGAPRKAEAVPTAQNVTVAEEIARPVQPEPAAEATAEPAAV
EDAVVPSAPVVEEPAAPAEEAAPKGRTRRRATRKVSAPAGSPAGAEAAVVTVAETAPEPV
VEPAAEAVVAEAPAEQAEAPAEPAAESAAPARPRRRAVRKATAPTASEEAAVVVVPAAEA
EAAAEEGAEGAAPAKKTARKTAKKATAKKAATKKTAAKKTVAKKTTAKKAAKTTAKTAAA
KSTAKKTTVTATTDE
NT seq
4008 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaaccgaccgaagccacagagtcctcaacgggctccgaactgaacacaccgagc
gacaccctgccgccgcgtcgtcggcgccgtgccgcttcccggccggcgggaccgcccgcc
gccaccgagacgcagcccgcggaggtggtcgagccggccataccgcccgctgacgtagag
aagctcgatcaggagcaggccgacctcgaggcggagaccgccgaggccgaagaggccgcc
gaggtcgaggagaccccggagcccgcgcctccggcccgcacgcgccgccgtgccgtgcgc
cgtgcgtcggcacccgccggtgcgcccgcggccgaggcggcggccgagaccgtggtgccc
gtgacggccgccgagccggtcgccgaggagcccgcccaggccgccgccgaggcgtccgag
gtgcctgaggtgtccgaggagccggccccgccgcgcgcccggcgccgtgccacccgccgg
gtgaccgcacctgccgcggcccccgctccggcgcaggacgccgaggccaccgagaccgcc
gagggcgacgccatggaccacgaggccgccgccgtcgaggagacccccgagcccgccccg
cgccgtacgcgccgccgcgccacccgaaccgccgccgcgccggaggccgtgcaggccgcc
ccggccgacgaggagccggtgaccgccgaggaacccgcgcaggctgaggcatccacggag
agcgccgaggccgaggaggccgccccgcgtcgtacgcgtcgtcgcgccacccgtcgtacg
gccgcgccggccgccgtcgaggaggccgccgcggagaccgtcgaggccgctcccgaggag
accgccgggacgccggtgaccgccgagaccccggtgaccgagggtgtcgagaccgagagc
cccgccgcgaccgctgccgccgccgaggacgacgccgctccgcgccgccggcgccgcgcc
gtccggcgtgccgccaccggcttcgccgagcccgcgcggtccgcctccggtgcggccgcc
gacgaggcgccgcgtccgtcgcggcccgccgtggccgtcttccaggcgcccgtcttcacc
gagccgcagttccagacgccgcagcgcgccgccgccgaggccgcagcggaggcggtgacc
gaggacgacgaggagctccgcgaggagcagcccgtcgccccgcgccgccggcgccgccgc
cgtggcgaggaccccgaaccgcaggccgccgtcgagccggccgccgaggacgagtccgac
gagaccgaggacggtgccgaggactccgccgacggcgacgagtccgaggagaccgggtcg
cgtcggcgccgccgccgcggtggccgccgccgccgtcgcggtgactccggcgagcaggac
gccgagggcgagagcgacagcgaggacaccgccgccgcgcaggccgagcaggacgccgag
gacaccgccgagcaggaggaggaggacgccgaggaggcgcacgacgactccagtggctcc
ggctccagcagcagccgccggcgccgtcgcaggcgccgccgcgccggtgacagctccgtg
gacgccgagccgggcgacggcgaccccgagcgcaccgtcgtcaaggtccgcgagccccgc
ccgaagtccgagccgtccgacgaggtgcagtccatcaagggctccacgcgtctggaggcc
aagaagcagcgccgccgcgagggccgcgagcagggccgccgtcgcgtcccgatcatcacc
gaggccgagttcctggcccgccgcgaggccgtcgagcgcgtgatggtggtccgccagcac
ggcgaccgcacccagatcggcgtcctcgaggacaacgtgctcgtcgagcactacgtcaac
aaggagcagtcgacgtcgtacgtcggcaacgtctacctgggcaaggtccagaacgtgctg
ccgtcgatggaggccgccttcatcgacatcggcaagggccgcaacgccgtgctctacgcc
ggtgaggtcaacttcgaggcgctcggcatggccaacgggccgcgccgtatcgagtccgcc
ctgaagtccggccagtccgtgctcgtccaggtcaccaaggacccgatcgggcacaagggc
gcgcgtctgaccagccaggtctccctgccgggccgctacctcgtgtacgtgcccgagggc
tcgatgaccggcatcagccgcaagctgcccgacaccgagcgtgcccggctgaagaccatc
ctcaagaagatcgtccccgaggacgcgggcgtcatcgtgcgcaccgccgccgagggcgcg
agcgaggacgagctgcgccgcgacgtcgaacggctccaggggcagtgggaggagatccgg
aagaaggcgaagagcggcaacgcgccgacgctgctctacggcgagccggacatgaccgtc
cgggtcgtccgcgacatcttcaacgaggacttctccaaggtcgtcgtcagcggtgacgag
gcgtgggagaccatccacggctatgtctcgcacgtggcgcccgacctcgccgagcggctc
cagaggtggaccagcgaggtcgacgtcttcgccacgtaccggatcgacgagcagctcgcc
aaggcgctggaccgcaaggtctggctgcccagcggcggttcgctggtcatcgaccggacc
gaggcgatggtcgtcgtcgacgtcaacaccggcaagttcacgggccagggcggcaacctc
gaggagaccgtcacccggaacaacctggaggcggccgaggagatcgtgcgccagctgcgg
ctgcgcgacctcggcggcatcatcgtcatcgacttcatcgacatggtgctggagtccaac
cgggacctggtgctgcggcgcctcctcgagtgcctgggccgggaccgtacgaagcaccag
gtcgccgaggtcacctcgctgggcctggtccagatgacccgtaagcgggtcggccagggc
ctgctggagtccttctccgagacctgtgtccactgcaacggccgcggtgtcatcgtgcac
atggagcagcccacgtccgccggtggcggaggtggcggcaagcgcaagaagcgcgcgcgg
gccggtgccggtcccgagcatgtgcacgaggcgtccgtcgccaccgagccggtcgagacg
gccgaggaggaggcggagtcggaggccgaggtcgccgccgaggtcgccgagcccaccgcg
ctcgcggagcccgcgttcgcgcccgacgaggagctgtacagcagcgtcgccgaggcggag
gccgccgcgcgcagcggtcgctcccggcgtcgcggtggccggcgcgcgtcggccccggcc
ggtgcgccgcgcaaggccgaggcggttcccaccgctcagaacgtgacggtcgcagaggag
atcgcccgtccggtccagccggagccggccgccgaggcgaccgccgagccggcggccgtg
gaggacgcggtcgtgccgtccgcgcccgtcgtcgaggagcccgcggctcccgccgaggag
gccgcgcccaagggccgtacacggcgtcgcgccacccgcaaggtgtccgcgcccgccggt
tcgcccgcgggggccgaggccgccgtggtgacggtcgccgagaccgcgccggagcccgtc
gtggagccggccgccgaggcggtcgtcgccgaggccccggccgagcaggccgaggcgccc
gccgagccggccgcggagagcgccgccccggcccgcccgcgccgccgtgcggtgcgcaag
gccaccgcgccgaccgcgtcggaggaggcggccgtcgtggtcgtccccgccgccgaggcg
gaggccgcggccgaggagggcgccgagggggccgctccggccaagaagacggcgcgcaag
acggccaagaaggccaccgcgaagaaggccgccaccaagaagacggcggccaagaagacg
gtggcgaagaagaccacggccaagaaggcggccaagacgaccgccaagacggccgcggcc
aagtcgacggcgaagaagaccacggtcaccgccaccaccgacgagtga
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