Streptomyces nigra: DC008_16590
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Entry
DC008_16590 CDS
T05839
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
snz
Streptomyces nigra
Pathway
snz03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
snz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DC008_16590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snz03400
]
DC008_16590
Enzymes [BR:
snz01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
DC008_16590
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
DC008_16590
DNA repair and recombination proteins [BR:
snz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
DC008_16590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Auto_anti-p27
Zn_ribbon_TFIIB
Zn_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
AWE51159
LinkDB
All DBs
Position
complement(3603551..3604363)
Genome browser
AA seq
270 aa
AA seq
DB search
MPELPDVEGFRGVLRTCAQGRIVRRIEVRDPGVLHGADARRLREALEGRRITGAERHGKW
LLARTGGPTLALHFGMTGSLVCAGPDDPVDPHDRVLFTLSGDRRLRYRDQRKLRGLWLAE
DESDVVRLLAGQGPDALDVDRERFEEALRGRRGTVKGVLLDQSAVAGLGNLLADEILWRA
RLSPDRPVRELTDSDRGGLYRQMRRTLRSAVPTGRVPPRASWLTGRRDDPDPHCPRCRAP
LRRTRVAGRTTVWCPGCQTAASGAPTGSRR
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactgccggacgtcgagggtttccggggcgtactccggacctgcgcacagggc
cggatcgtgcgccggatcgaggtgcgtgaccccggcgtgctgcacggcgccgacgcgcgg
cggctgcgggaggcgctggagggccggcggatcaccggcgccgaacggcacggcaagtgg
ctgctcgcccgtaccggcggccccaccctggccctgcacttcggtatgaccggctcgctc
gtgtgcgccgggccggacgaccccgtggacccccacgaccgcgttctgttcaccctgtcc
ggcgaccgccgcctgcgctaccgcgaccagcgcaagctccggggcctgtggctggccgag
gacgagtccgacgtcgtacggctgctggccgggcaggggcccgacgcgctggacgtggac
cgcgagcggttcgaggaggccctgcgcgggcgccggggcaccgtgaagggcgtgctgctc
gaccagtccgccgtcgccggtctcggcaacctgctcgccgacgagatcctgtggcgggcc
cggctgagccccgaccgtccggtgcgcgagctgaccgactccgaccgcgggggcctctac
cgccagatgcggcgcaccctgcgctccgccgtgcccaccgggcgcgtcccgccgcgcgcc
tcctggctgaccggccgccgggacgaccccgacccgcactgcccccgctgccgcgccccg
ctgcgccggacccgcgtggccggccggacgaccgtgtggtgccccggctgccagaccgcg
gcctccggcgcccccaccggatcgcgccgatga
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