Streptomyces nigra: DC008_25265
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Entry
DC008_25265 CDS
T05839
Name
(GenBank) RNA polymerase sigma factor WhiG
KO
K02405
RNA polymerase sigma factor FliA
Organism
snz
Streptomyces nigra
Pathway
snz02020
Two-component system
snz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
snz00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
DC008_25265
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DC008_25265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snz03021
]
DC008_25265
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
snz02035
]
DC008_25265
Transcription machinery [BR:
snz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DC008_25265
Bacterial motility proteins [BR:
snz02035
]
Flagellar system
Flagellar assembly proteins
Stator
DC008_25265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
Sigma70_ECF
HTH_31
HTH_23
HTH_Tnp_ISL3
UPF0122
Motif
Other DBs
NCBI-ProteinID:
AWE52681
LinkDB
All DBs
Position
5420014..5420856
Genome browser
AA seq
280 aa
AA seq
DB search
MPQHTSGSDRAAIPPAARDGGSARPPAPSTLDELWRSYKATGDERLREQLILHYSPLVKY
VAGRVSVGLPPNVEQADFVSSGVFGLIDAIEKFDIDREIKFETYAITRIRGAMIDELRAL
DWIPRSVRQKARNVERAYATLEARLRRTPTESEVAAEMGIAVEELHAVFSQLSLANVVAL
EELLHVGAEGGDGLSVMDTLEDTTADNPVEVAEDRELRRFLARAINTLPEREKTVVTLYY
YEGLTLAEIGNVLGVTESRVSQIHTKSVLQLRAKLAGFGR
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atgccccagcacacctccgggtccgaccgggcggcgatccccccagccgcccgtgacggt
ggcagcgcgcggccgcccgctccctcgacactcgacgagctgtggcggtcgtacaaggcg
acgggggacgagcggctgcgcgaacagctgatcctgcactactcgcccctcgtcaaatac
gtggcgggccgggtgagcgtcggcctgccgcccaacgtcgagcaggccgacttcgtgtcg
tccggggtgttcggactgatcgacgcgatcgagaagttcgacatcgaccgggagatcaag
ttcgagacgtacgcgatcacccggatccgcggcgcgatgatcgacgaactccgggcgctg
gactggatcccacgctccgtccggcagaaggcacgcaacgtcgagcgggcctacgccacc
ctggaggcccggctgcgccggacaccgaccgagtccgaggtcgccgccgagatgggcatc
gcggtcgaggaactccacgcggtgttcagccagttgtcgctggccaacgtggtcgccctg
gaggagctgctgcacgtcggcgccgaaggcggcgacggactcagcgtgatggacacgctg
gaggacaccaccgccgacaaccccgtcgaagtcgccgaggaccgggaactgcggagattc
ctcgcccgggcgatcaacacactgcccgaacgcgagaagaccgtcgtcacgctgtactac
tacgaaggcctcaccctcgccgagatcggcaacgtcctcggcgtcaccgagagccgggtc
agccagatccacaccaagtccgtactccagctccgggcgaagctggccggcttcggtcgt
tga
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