KEGG   Streptomyces nigra: DC008_25620
Entry
DC008_25620       CDS       T05839                                 
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
  KO
K03177  tRNA pseudouridine55 synthase [EC:5.4.99.25]
Organism
snz  Streptomyces nigra
Brite
KEGG Orthology (KO) [BR:snz00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:snz03016]
    DC008_25620
Enzymes [BR:snz01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.25  tRNA pseudouridine55 synthase
     DC008_25620
Transfer RNA biogenesis [BR:snz03016]
 Eukaryotic type
  tRNA modification factors
   Psudouridine synthases
    DC008_25620
 Prokaryotic type
    DC008_25620
SSDB
Motif
Pfam: TruB_N TruB_C TruB_C_2 PseudoU_synth_2 DKCLD
Other DBs
NCBI-ProteinID: AWE52741
LinkDB
Position
5500582..5501487
AA seq 301 aa
MTQKNTTPDGLVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVEKAT
KLLGHLALTEKEYLGTIRLGQTTVTDDAEGEITGSTDASKVTRDAVDAGIAQLTGEIMQV
PSKVSAIKIDGVRSYKRARDGEDFEIPARPVTVSSFSVYDLRDAVADDGTPVLDLVVSVV
CSSGTYIRALARDLGADLGVGGHLTALRRTRVGPYKLDAAKTLDQLQQELTVMPIAEAAS
AAFRRWEIDARRARLLSNGVRLDMPDEYAGAGPVAVFDPEGRFLALVEEHKGKAKSLAVF
G
NT seq 906 nt   +upstreamnt  +downstreamnt
atgacgcagaagaacaccacgcccgacggccttgtcatcgtcgacaagccgtcgggcttc
acgtcgcacgacgtggtcgccaagatgcgcggcatcgcccgcacccgccgggtcgggcac
gccggcaccctcgacccgatggccacgggcgtgctcgtcctcggcgtcgagaaggcgacc
aagctgctcggtcatctggccctgaccgagaaggagtacctgggcacgatccgcctgggc
cagaccacggtcaccgacgacgccgagggcgagatcacggggtccaccgacgcctcgaag
gtcacccgcgacgccgtcgacgccgggatcgcccagctcaccggcgagatcatgcaggtg
ccgtccaaggtcagcgccatcaagatcgacggcgtccgctcctacaagcgggcccgcgac
ggcgaggacttcgagatccccgcgcgaccggtcaccgtgtcgtccttctcggtgtacgac
ctccgggacgccgtcgccgacgacgggacccccgtcctcgacctggtcgtctcggtcgtc
tgctcctccggcacctacatccgggccctcgcccgcgacctcggtgccgacctgggcgtc
ggcgggcacctcacggcgctgcgccgcacccgcgtcgggccgtacaagctggacgccgcg
aagacgctggaccagctccagcaggagctgacggtcatgccgatcgccgaggccgcgtcg
gcggccttccgccgctgggagatcgacgcccggcgcgcccggctgctctcgaacggcgtc
cgcctcgacatgcccgacgagtacgccggtgccgggcccgtcgcggtcttcgaccccgag
ggacgcttcctcgccctggtcgaggagcacaagggcaaggccaagagcctcgccgtgttc
ggctga

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