Streptomyces nigra: DC008_25885
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Entry
DC008_25885 CDS
T05839
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
snz
Streptomyces nigra
Pathway
snz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DC008_25885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snz03019
]
DC008_25885
Messenger RNA biogenesis [BR:
snz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DC008_25885
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
DUF1732
Motif
Other DBs
NCBI-ProteinID:
AWE52786
UniProt:
A0A2S1IJL1
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Position
5569794..5571479
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AA seq
561 aa
AA seq
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MSHPHPELGPPPPLAEGGLRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGI
DLILPDFSSIRNRLDDIEGIVLTHGHEDHIGGVPFLLREKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLGVSEGNRERIGPFDCEFVAVNHSIPDALAVAIRTPAGMVVHTGDFKMDQLP
LDNRLTDLHAFARLSEEGIDLLLSDSTNAEVPGFTPHERDISNVLRQVFAGARKRVIVAS
FASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARDLGYLKVPPGLVVDVKTLDDLPD
SEVVLVCTGSQGEPMAALSRMANRDHQIRIVQGDTVILASSLIPGNENAVYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELLYFYNICRPKNLMPVHGEWRHLRANAELGALTGVPHD
RIVIAEDGVVVDLVEGKAKIAGKVQAGYVYVDGLSVGDVGEPALKDRKILGDEGIISVFL
VVDSSTGKITGGPHIQARGSGIEDSAFADVIPRITETLERSAQDGVVEPHQLQQLVRRTL
GKWVSDTYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcatcctgaactgggcccgcccccgccgcttgccgaaggcgggctgagg
gtcaccccgctcggcggcctcggcgagatcggccggaacatgaccgtcttcgagtacggc
ggccgcctgctgatcgtcgactgcggagtgctcttccccgaggaggagcagcccggaatc
gacctgatcctgccggacttctcgtccatcaggaaccgcctcgacgacatcgagggcatc
gtcctcacccacggtcacgaggaccacatcggcggtgtgcccttcctgctgcgcgagaag
ccggacatcccgctgatcggctccaagctgaccctggccctgatcgaggccaagctccag
gagcaccggatccgcccgtacaccctgggggtgtccgaggggaaccgcgagcgcatcggc
cccttcgactgcgagttcgtcgcggtcaaccactccatcccggacgccctcgccgtggcc
atccgcacccccgcgggcatggtggtccacacgggcgacttcaagatggaccagctcccg
ctggacaaccgcctgaccgacctgcacgccttcgcgcgtctgagcgaagagggcatcgac
ctccttctctccgactccacgaacgcggaagtgccgggcttcacgccgcacgagcgggac
atctccaacgtcctgcgccaggtcttcgccggtgcccgcaagcgcgtgatcgtggccagc
ttcgccagccacgtccaccgcatccagcagatcctggacgcggcccacgagtacggccgc
cgggtcgccttcgtcggccgttcgatggtccgcaacatggggatcgctcgcgacctcggc
tacctcaaggtcccgccgggcctggtcgtcgacgtcaagacgctcgacgacctcccggac
agcgaggtcgtcctggtctgcacgggctcccagggcgaaccgatggccgccctgtcccgg
atggccaaccgcgaccaccagatccgcatcgtccagggcgacacggtgatcctggcgtcg
tcgctcatcccgggcaacgagaacgcggtctaccgcgtgatcaacggcctgacccgctgg
ggcgccaacgtcgtccacaagggcaacgccaaggtccacgtctcgggccacgcctcggcc
ggcgagctgctgtacttctacaacatctgccgcccgaagaacctgatgcccgtccacggc
gaatggcgccatctgcgcgccaacgccgagctgggcgccctgaccggcgtcccgcacgac
cggatcgtcatcgccgaggacggcgtcgtcgtcgacctggtcgagggcaaggcgaagatc
gcgggcaaggtccaggccggatacgtctacgtcgacggcctctccgtcggtgacgtcggc
gagccggccctgaaggaccgcaagatcctcggcgacgagggcatcatctcggtcttcctg
gtggtggactcctccacaggcaagatcacgggcggcccgcacatccaggcccgcggctcc
ggtatcgaggactcggccttcgcggacgtcatcccgaggatcaccgagacgctggaacgc
tcggcccaggacggtgtggtcgaaccgcaccagctgcagcaactggtgcgccggaccctc
ggcaagtgggtctcggacacctaccgtcgccggccgatgatcctgccggtggtcgtggag
gtctga
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