Streptomyces nigra: DC008_28060
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Entry
DC008_28060 CDS
T05839
Name
(GenBank) ribonuclease
KO
K01167
ribonuclease T1 [EC:
4.6.1.24
]
Organism
snz
Streptomyces nigra
Brite
KEGG Orthology (KO) [BR:
snz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snz03019
]
DC008_28060
03016 Transfer RNA biogenesis [BR:
snz03016
]
DC008_28060
Enzymes [BR:
snz01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.24 ribonuclease T1
DC008_28060
Messenger RNA biogenesis [BR:
snz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DC008_28060
Transfer RNA biogenesis [BR:
snz03016
]
Eukaryotic type
3'processing and CCA adding factors
3'processing factors
DC008_28060
Prokaryotic type
DC008_28060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease
DUF4179
Motif
Other DBs
NCBI-ProteinID:
AWE53165
LinkDB
All DBs
Position
complement(6079306..6079692)
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AA seq
128 aa
AA seq
DB search
MRFPPHLTRIGSAAALLSALLVGGTVSATPAAAAVGSICQSALPSQAHDTLDLIEQGGPF
PFEQDGTVFQNREGILPSQSTGYYHEYTVITPGSDTRGARRIVTGEEPQEDYYTADHYAS
FDLIDHGC
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgagattccccccacacctcacacgcatcggctccgcggcggcgctgctgtccgccctc
ctcgtgggcggcacggtgtccgccactcccgcggcggcggcggtcgggagcatctgccag
agcgccctgccctcgcaggcccacgacaccctggacctcatcgaacagggtggccccttc
cccttcgaacaggacggcaccgtcttccagaaccgggaaggcatcctgccgagccagtcg
accggctactaccacgagtacacggtgatcacgccgggctccgacacccggggcgcgcgg
cgcatcgtcaccggtgaggagccgcaggaggactactacacggccgaccactacgcgtcc
ttcgacctgatcgaccacggctgctga
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