Streptomyces nigra: DC008_32290
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Entry
DC008_32290 CDS
T05839
Name
(GenBank) RNA polymerase sigma factor SigF
KO
K03090
RNA polymerase sigma-B factor
Organism
snz
Streptomyces nigra
Brite
KEGG Orthology (KO) [BR:
snz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snz03021
]
DC008_32290
Transcription machinery [BR:
snz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DC008_32290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
KORA
HTH_Crp_2
HTH_23
MarR
HTH_3
Sigma70_ECF
DUF7343
HTH_1
MarR_2
HTH_10
Trp_repressor
HTH_37
HTH_24
GerE
HNH_repeat
OrfB_IS605
HTH_Tnp_4
Motif
Other DBs
NCBI-ProteinID:
AWE54907
LinkDB
All DBs
Position
7035668..7036474
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AA seq
268 aa
AA seq
DB search
MPLIEDPSRVKPQDARELSRQFFDRLDVLEEGTHEYQYVRNTLIEMNLSLVRYAASRFRA
RGDSLEDIVQVGTIGLIKAIDRFEISREVEFTTFAVPYIVGEIKRFFRDTSWAVHVPRRL
QEARVELAKATEELSSRLGRTPTTRELSELMSLSEEEVIEARKASNCYQSASLDAAVSGD
AESGESVLADLLGEEDPSLELVEDFHSLAPLIAGLDDRERKIIHLRFVEELTQSQIAEQI
GVSQMHVSRLISRIIKQLRVGLLEPGVA
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
ctgccgctgatcgaggacccgtcgcgggtgaagccccaggacgcacgcgagctgtcgcgt
cagttcttcgaccgactggatgtgctggaagagggcacgcacgaataccagtacgtacgc
aacaccctgatcgagatgaacctgtccctcgtgcggtacgcggcatcgcgcttccgtgcc
cgcggggactcgctggaggacatcgtccaggtcggcacgatcgggctgatcaaggcgatc
gaccggttcgagatctctcgcgaggtcgagttcacgaccttcgccgtgccgtacatcgtc
ggtgagatcaagcgtttcttccgtgacaccagctgggccgtgcatgtgccgcgccggctg
caggaggcgcgcgtggagctggccaaggccaccgaggagctcagctcccggctcggccgg
acgccgaccacccgtgagctgtccgagctgatgtcgctgtcggaggaagaggtcatcgag
gcccgcaaggcctccaactgctaccagtcggcctcgctggacgccgccgtctccggtgac
gcggagagcggcgagtcggtgctggcggacctcctcggcgaggaggacccgtcgctggag
ctggtggaggacttccactcgctcgccccgctgatcgcgggactggacgaccgggaacgg
aagatcatccacctgcggttcgtggaggagctgacccagtcgcagatcgccgagcagatc
ggcgtctcgcagatgcatgtctcgcggctcatcagccgcatcatcaagcagctgcgggtc
ggactgctggagcccggggtcgcctga
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