Sulfuriroseicoccus oceanibius: G3M56_001120
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Entry
G3M56_001120 CDS
T07818
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
soa
Sulfuriroseicoccus oceanibius
Pathway
soa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G3M56_001120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soa03019
]
G3M56_001120
03009 Ribosome biogenesis [BR:
soa03009
]
G3M56_001120
Enzymes [BR:
soa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G3M56_001120
Messenger RNA biogenesis [BR:
soa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G3M56_001120
Ribosome biogenesis [BR:
soa03009
]
Prokaryotic type
rRNA helicases
G3M56_001120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QQL45218
UniProt:
A0A6B3LGE5
LinkDB
All DBs
Position
273599..275359
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AA seq
586 aa
AA seq
DB search
MDIPPFSELGLPDALVSAVAALGYEKPSPIQALSIPHALTGRDLIGLSQTGSGKTAAFTL
PVLAKLDVAINAPQALILCPTRELAVQVCEEVHRLAAHLDNFRAVPVYGGAPIDRQIRSL
RNGPQMVVGTPGRLLDHLRRKTFKTDHIQTVVLDEADRMLDMGFREEMEDLLGSMPEEHQ
TLFFSATMNQGVSRLIQRFGNDPETVSIEQKSKTVDSIEQSYFEVRNRSKVEVMSRILDM
ESPRLAIAFCNTKRVVDETTEALIARGYNADRLHGDITQQMRERTLKRFREGTVEVLVAT
DVAARGLDVDDIDVVFNLDLPQDPEDYVHRIGRTGRAGRSGKAYTFVFGRDIHRLQMVER
YTKHIIRRERIPSVEQVEGKRSDLLFEALKDRLESGKFDQQQEYVDRLLEQGHTPTDIAG
ALFTLLREAQGREGETIQEDRHPDRPTPRRTGDDAPRRGERRERGDRGDRREFRDRDDRR
GDRRERGDRGDRGDRGGRDFGPRPVEEGMTRLFVSVGKAAGAKPGEIAGMIYNEANLSRD
DVGRISLFPRHTLVDVRADVASNVVKALKHAKMKGRPVRVDFDRQG
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atggatatcccaccgttctcagaactcggactgccagacgccctcgtctcagcagtcgca
gccctcggctacgaaaagccgtcccctattcaagccttgtcgatcccacacgccctcacc
ggccgtgacctgatcggcttgtcgcagactggatctggcaaaaccgccgcattcaccctg
ccggtcttggccaaattggacgtcgccatcaacgctccacaagcgctgatcctgtgccct
acccgtgaacttgccgtgcaggtgtgcgaagaagtgcaccgcctcgcagctcacctcgat
aatttccgcgccgttcctgtttacgggggtgccccgatcgaccgccagatccgcagcttg
cgcaatggcccacagatggtcgtcggcacacctggccgattgctcgaccatttgcgccgc
aagaccttcaagaccgaccacattcaaaccgtggttctcgacgaagccgaccgcatgctc
gacatgggcttccgcgaggaaatggaagacctgctcggctcgatgcctgaggagcaccag
acgctcttcttctcggccacaatgaaccaaggcgtgagccgcctgatccagcgcttcggc
aacgatccggaaaccgtttccatcgagcagaagtcgaagaccgtcgacagcatcgagcaa
agctacttcgaagtacgcaaccgctcgaaagtcgaggtcatgagccgcatcctcgacatg
gagtcaccgcgtctcgcgatcgcattctgcaacaccaagcgtgtcgtggacgaaaccacc
gaggcgttgatcgcccgtggctacaatgccgaccgtctccacggcgacatcacccagcag
atgcgcgagcgcacgctcaagcgcttccgtgagggtaccgtcgaggtgctcgttgccacc
gacgtggccgcacgtggtctcgacgtcgatgacatcgatgtcgtgttcaacctggacctg
ccacaggatccggaagactacgtccaccgcatcggccgcaccggtcgtgccggtcgctcg
ggcaaggcttacaccttcgtgttcggccgtgacatccaccgcttgcagatggtggagcgc
tacaccaagcacatcatccgccgcgagcgcatcccatccgtggagcaagttgaaggaaaa
cgttccgacctcttgtttgaagcgctcaaggaccgccttgagagcggcaagttcgaccag
cagcaggagtatgtcgaccgcttgctcgaacagggacacaccccgactgatatcgctggc
gctctcttcaccctcttgcgcgaagcccagggccgcgaaggagaaaccattcaggaagac
cgtcacccagaccgcccgacaccacgccgcaccggcgacgacgccccacgtcgtggggag
cgtcgcgaacgcggtgaccgtggtgaccgccgggagttccgcgaccgcgacgaccgccga
ggtgatcgccgtgagcgaggcgaccgcggagatcgtggtgatcgtggtggccgcgacttc
ggtcctcgtccggtcgaagagggcatgacccgcttgtttgtatccgtcggtaaagccgcg
ggagccaagcctggggagattgccggaatgatctacaacgaggccaacttgagccgcgac
gacgtcggccgcatttcgctcttcccacgtcacaccttggtggacgtgcgcgcagacgtg
gcgagcaatgtcgtgaaggcgctcaagcacgccaagatgaagggccgcccagtgcgcgtc
gatttcgaccgccagggctaa
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