Sulfuriroseicoccus oceanibius: G3M56_001890
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Entry
G3M56_001890 CDS
T07818
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
soa
Sulfuriroseicoccus oceanibius
Pathway
soa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G3M56_001890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soa03019
]
G3M56_001890
Enzymes [BR:
soa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G3M56_001890
Messenger RNA biogenesis [BR:
soa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G3M56_001890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
P-loop_SecA
Utp25_C
Cas3-like_C_2
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
QQL45366
UniProt:
A0A6B3LFJ9
LinkDB
All DBs
Position
complement(462288..463598)
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AA seq
436 aa
AA seq
DB search
MKFSDLRLHPDVLRAIDDAGYTHPTPIQRSAIPRVLAGKDVLGIAQTGTGKTAAFTLPMI
HRLLKETPRAEGTRALIIAPTRELAMQIDENVRKYSAHTDLSIGAVVGGVGESPQIEALD
KGADIIIATPGRLSDLIADGHGKFGALEFLVLDEVDRMLDMGFLPQVKEVTRGFPRKRQT
LLFSATLAKPVREITGHFLKEPSIIEIGKQATPADTVDQSVVNVEPHLKQALLEHLLEDH
NFYTVLVFASMKQDAEDLGKRLAKSGVSVAVLHGDRSQNQRSRALDDFRSGKIRVLVATD
VAARGIDVDGVTHVINYDFPRKNDDYVHRIGRTGRAGENGRAITFVTHRDRDGLRRLERF
IERTLPRDEVAGFDFDQFPPEHHLGPRRSKPKRSADPRDVKRAEEKEKAKNRRKPVKRKA
PAKKVARKSAPKKRRR
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgaagttttccgatctccgccttcacccggatgtgctccgcgccatcgacgacgcaggc
tatacccaccctaccccgattcagcgcagtgcgattccccgtgtgctggcgggcaaggac
gtgctgggcatcgcgcagacgggcaccggcaagactgcggccttcacgctgccgatgatc
catcgcttgctcaaagagacgccacgcgccgaaggtactcgtgcgcttatcattgcacct
acccgcgagctggcgatgcagatcgacgagaacgtgcgcaagtattccgcgcatacggac
ttgagcatcggagcggtcgtggggggggtgggcgagagcccgcagatcgaggcgctcgac
aagggcgccgacatcatcatcgcaacgccggggcgtctcagcgatctgatcgctgacggt
cacggaaagttcggcgcgcttgagttcctcgtcctcgacgaggtcgaccgcatgctcgac
atgggcttcctgccacaggtgaaggaagtgacgcgcggcttcccacgcaaacgccagaca
ttgcttttctccgccaccttggccaagccggtgcgtgagatcaccggtcatttcctcaag
gagccgtcgatcattgaaatcggcaagcaggcgactccggccgatactgtcgatcaatcg
gtggtgaacgtggagccgcacctgaagcaggcgcttttggagcatttgcttgaggaccac
aatttctacaccgtactcgttttcgccagcatgaagcaggacgcggaggatctcggcaag
cgtctcgcgaagtcgggagtctcggtggctgtgctccatggcgaccgcagccagaaccag
cgcagccgggcgcttgatgatttccgctcgggtaagatccgcgtgctcgtggccaccgac
gtggcggcccgcggcatcgacgtcgatggcgtgacgcatgtgatcaactatgactttcct
cgcaagaacgacgactacgttcatcgcatcggtcgtaccggacgcgctggtgagaatggc
cgtgcgatcacgtttgtgacccaccgcgaccgcgatgggctgcgtcgtcttgagcggttt
atcgagcggacgttgccacgtgatgaggtggctggattcgactttgatcagttccccccc
gagcaccatctcgggccgcgccgtagcaagccaaagcgcagcgcggatccacgcgacgtg
aagcgcgcggaggagaaggaaaaggcgaagaaccgccgcaagccggtgaagcgcaaagcg
ccggcgaagaaggtcgcccgcaagtccgcgccgaagaaacgccgccgatag
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