Sulfuriroseicoccus oceanibius: G3M56_004060
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Entry
G3M56_004060 CDS
T07818
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
soa
Sulfuriroseicoccus oceanibius
Pathway
soa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
soa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
G3M56_004060 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
soa03021
]
G3M56_004060 (rpoC)
03400 DNA repair and recombination proteins [BR:
soa03400
]
G3M56_004060 (rpoC)
Enzymes [BR:
soa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
G3M56_004060 (rpoC)
Transcription machinery [BR:
soa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
G3M56_004060 (rpoC)
DNA repair and recombination proteins [BR:
soa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
G3M56_004060 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QQL45768
UniProt:
A0A6B3L8Q1
LinkDB
All DBs
Position
1043314..1047465
Genome browser
AA seq
1383 aa
AA seq
DB search
MSIDPNLEEFYGVDKPESGFDQVSIRVASPDAIREWSRGEVINPETINYRTFKPEKGGLF
CERIFGPTKDWQCACGKYKSIKYKAVTCDRCGVEVTLSRVRRERMGHIELAVPVTHIWFY
KCMPSRLGLALDMTARSLERVIYYEDFIVIDPGNSPLETGQLLTETELREAEDEYGESFR
AGMGAEAVKEILSNLDLAKEIAQIEEDMEKTRSKQNRKKFAKRLKLMRGFAESYSRPEWM
VLDVLPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKNLLMLKTPDVIIRNEKR
MLQEAVDALFDNGRHGRAVTGAGNRPLKSLSDMLKGKGGRFRQNLLGKRVDYSGRSVIVI
GPELRLNQCGLPKKMALVLFEPFIIRRLKEMGYVHTVRSAKKMIERKTPEVWDILEEVTK
GHPVLLNRAPTLHRLSIQAFEPVLIEGAAIRLHPLTCSAYNADFDGDQMAVHVPLSVEAQ
MEARMLMLAPNNIFSPSSGKPITTPSQDIILGSYYLTHRKHEAPKNKRGENAHLPMFANT
TEVEFAIASRKLGYHDAIRLLNPDFGKDTVFGDKENRVIETTPGRVRFNEIWPEDLGFIN
STVSKGEISNIIWRCYQVAGQEETVKTLDRLKALGFKEATRSGASIGIVDMVIPEQKQEQ
LRASYEALEVVENQRKRGIITDGERYNKIIDTWTQAGDEIQKALYAKLEHNDGKKETNPL
FMMVDSGARGNKQQIKQLSGMRGLMAKPSGEIIERPITSNFREGLSVLEYFISTHGARKG
LADTALKTADSGYMTRKLVDVAQDVIVTIKDCKTLNGITVESIYEGDEEVVDLATRIYGR
TSAENVKDPVSGEFIVQEGDVITEDQAARVQDIGVEKLKIRSVLTCSADRGCCVQCYGLN
LATGKKVKVGTAVGIIAAQSIGEPGTQLTMRTFHVGGTASATFKQPIVKAKNGGFVRYND
VRTVEDKDGNYIALNKNGSASIVDEDGRELENYNVVIGSVINIADGDKIRKGSTLLTWDP
YNVPIITEKAGKVEFRDMIMGITIGQDESSGDDSGAIKVIEHKDELHPQIVIVDVASGEV
QASYSVPTGANLSVKEGEVITAGTQVARTPRKVSKTKDITGGLPRVAELFEARTPKDPCV
IAKIDGVIDINGTVRGKKKVIVRDPETLEEEDHLIPMNKHIIVQQGDTVKRGQQLTEGPA
VPHDILDVLGPNELQAHLTNEVQEVYRLQGVEINDKHIEIIIRQMLRKVKVTEPGDSDFL
WGDQVEKSTFERINREIIEEGGKPAEGEPVLLGITKASLETESFISAASFQDTTRVLTEA
ATLGKIDTLDGFKENVIMGHLIPAGTGFRQINKVEAIETEIAEEFASADTEAAEPQASGD
DVL
NT seq
4152 nt
NT seq
+upstream
nt +downstream
nt
atgagcattgatcctaatctcgaggaattctacggcgtggacaaacctgagtccggcttt
gaccaggtctcgatccgtgttgcctctcccgatgccatccgtgaatggagccgcggtgag
gtgatcaacccggaaaccatcaactaccgtaccttcaagcctgagaagggcggcctcttc
tgtgagcgtatcttcggtccaaccaaggactggcagtgtgcttgcggtaagtacaagagc
atcaagtacaaggcggtgacctgtgaccgatgcggtgtggaggtgactctgtcgcgcgtg
cgtcgtgagcgcatgggccacatcgagcttgccgtgcctgtgacccacatctggttctac
aagtgcatgccatcgcgtcttggtctcgccctcgacatgaccgcgcgctcgcttgagcgc
gtgatctactacgaagatttcatcgtcatcgatccaggcaattcgccactcgaaaccggc
cagcttttgaccgagaccgagttgcgtgaagccgaggacgagtacggcgagagcttccgc
gccggaatgggtgccgaagccgtgaaggaaattctttccaacctcgacctggcgaaagag
atcgcccagatcgaagaggacatggagaagacccgctcgaagcagaaccgtaagaagttc
gccaagcgcctcaagttgatgcgtggcttcgccgagtcctactcgcgtcctgagtggatg
gtcctcgacgtgctgcctgtgcttcctccggacctgcgtccgttggtgccactggaaggt
ggccgtttcgcgacctccgacctcaacgacctctaccgtcgtgtcattaaccgtaacaac
cgtcttaagaacctgctcatgctcaagactccggatgtgattatccggaacgagaagcgc
atgcttcaggaagctgtggatgcgttgttcgacaacggtcgtcacggccgtgcggtgact
ggtgctggcaaccgcccgctcaagtcgctctccgacatgctcaagggtaagggcggacgt
ttccgtcagaacctcctcggtaagcgagtcgactactccggtcgttccgtgatcgtgatc
ggacctgagctgcgtctcaaccagtgtggtcttcctaagaagatggcactcgtcttgttc
gagccattcatcatccgtcgcttgaaggagatgggctacgtgcacaccgtgcgttcggcc
aagaagatgatcgagcgcaagactccggaagtctgggacatcctcgaagaggtgaccaag
ggccatccggtgttgctcaaccgtgcaccgaccctccaccgtctgtcgatccaggcattc
gagcctgtgttgatcgaaggtgcggcgatccgtttgcatccgttgacctgttccgcatac
aacgcggacttcgacggtgaccagatggctgtgcacgtgccactctcggtggaagcgcag
atggaagcacgcatgctgatgcttgctccaaacaacatcttcagcccgtcgagcggtaag
ccaatcaccactccatcgcaggacatcattcttgggtcgtactacctgacccaccgcaag
catgaggctcctaagaacaagcgtggtgagaatgcgcacctgccaatgttcgccaacacc
accgaagtggagttcgcgatcgctagccgcaagctgggttaccacgatgcgatccgcctt
ttgaaccctgacttcggtaaggacaccgtgttcggtgacaaggagaaccgcgtgatcgaa
accacccctggtcgtgtccgattcaacgaaatctggcctgaagatctcggcttcatcaac
agcaccgtcagtaagggcgaaatctcgaacatcatctggcgctgctaccaagttgccgga
caggaagagaccgtcaagacactcgaccgcctcaaggctctcggcttcaaggaagctacc
cgctcgggtgcatcgatcggtatcgtcgacatggtgatcccagagcagaagcaagagcag
ctgcgtgcgtcgtacgaagctctcgaagtggtcgagaaccagcgcaagcgcggtattatc
accgacggtgagcgttacaacaagatcatcgatacctggacccaggctggtgacgagatc
cagaaggctctctacgccaagcttgagcataacgacggcaagaaggagaccaacccgctc
ttcatgatggtggactccggtgcccgtggtaacaagcagcagattaagcagctctcgggt
atgcgtggtctgatggccaagccgtccggtgagatcattgagcgtccgattacctcgaac
ttccgtgaaggtctgtcggtgcttgagtacttcatctccacccacggtgcgcgtaaaggt
cttgccgataccgctctgaagaccgctgactcgggttacatgacccgtaagctcgtcgac
gtggcgcaggacgtgatcgtgaccatcaaggactgtaagacactcaacggcatcaccgtc
gagtcgatctacgaaggtgacgaagaggtcgtggacctcgcaacccgcatctacggtcgt
acctcggctgagaacgtgaaggacccggtttccggcgaattcattgtgcaggaaggcgac
gtcatcaccgaagaccaggccgcacgcgtccaggacatcggggttgagaagctcaagatc
cgctcggtgctgacctgctccgctgaccgcggttgctgtgtccagtgttacggcctcaac
cttgccaccggcaagaaagtgaaggtcggaaccgctgtgggtattatcgccgctcagtcg
attggtgagccgggtacccagctgaccatgcgtaccttccacgtgggtggtaccgcgagt
gcaaccttcaaacagccgattgttaaggcgaagaacggtggatttgtccgctacaacgat
gtccgcaccgttgaagacaaggacggcaactacatcgccctcaacaagaacggatcggca
tcgatcgtcgacgaagatggtcgcgagctcgagaactacaacgtggtgatcggatccgtg
atcaacattgctgacggcgacaagatccgtaagggatcgaccctcctgacgtgggatcca
tacaacgtgccaatcatcaccgagaaggccggtaaggtggagttccgtgacatgatcatg
ggcatcaccattggtcaggacgaaagctccggagacgacagcggcgcgatcaaggtgatc
gagcacaaggacgaacttcacccgcagatcgtcatcgttgacgtggcaagcggcgaagtc
caggcctcgtactcggtgccgaccggtgccaacctttccgtcaaggaaggtgaagtcatc
accgctggtacccaggttgcccgtacaccgcgcaaggtgtcaaagaccaaggacattacc
ggtggtcttccgcgtgttgccgagttgttcgaagcgcgtacaccgaaggatccatgcgtc
atcgccaagatcgacggtgtcatcgacatcaacggaaccgtccgcggtaagaagaaggtc
atcgtccgcgatccagagactctggaggaggaagatcacctcatcccaatgaacaagcac
atcatcgtccagcagggcgacacggtgaagcgtggccagcagctgaccgaaggtccggcg
gtgccacacgacatcctcgacgtgcttgggccgaacgagcttcaggctcacctcaccaac
gaggtgcaggaggtttaccgcctccagggtgtggagatcaatgacaagcacattgagatc
atcatccgccagatgcttcgcaaggtgaaggtgaccgagccaggtgactccgatttcctt
tggggcgaccaggtcgagaagagcaccttcgagcgcatcaaccgcgagatcatcgaagaa
ggtggtaagcctgctgaaggcgagccagtcctcctcggtatcaccaaggcgtcgttggaa
accgagtcgttcatctcggcggcttccttccaggacaccacccgcgtgctcaccgaagcg
gcaaccctcggcaagatcgataccctcgacggcttcaaagagaacgtcatcatgggtcac
ctcatccctgctggtactggcttccgccagatcaacaaggtcgaggccatcgagaccgag
atcgctgaagagttcgcctctgcggacaccgaagcggctgagccacaagcctccggcgac
gacgtgctctaa
DBGET
integrated database retrieval system
