Sulfuriroseicoccus oceanibius: G3M56_005060
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Entry
G3M56_005060 CDS
T07818
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
soa
Sulfuriroseicoccus oceanibius
Pathway
soa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G3M56_005060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soa03019
]
G3M56_005060
Enzymes [BR:
soa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G3M56_005060
Messenger RNA biogenesis [BR:
soa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G3M56_005060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25_NTPase-like
Utp25_C
ERCC3_RAD25_C
Cas3-like_C_2
RecX_HTH2
Motif
Other DBs
NCBI-ProteinID:
QQL45952
UniProt:
A0A7T7F3A7
LinkDB
All DBs
Position
complement(1285186..1286490)
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AA seq
434 aa
AA seq
DB search
MQSSDISFSELKLSAPIQEALKAKNYTHPSPIQARAIPHILDGRDLIGCAQTGTGKTAAF
ALPILQLLTESKSRRTPRRPRALILTPTRELAAQIMDNFEAYGSNLPLTSQVVFGGVGIN
PQINRLSKGTDILVATPGRLLDLAQQGKVFFDSVEIFVLDEADRMLDMGFIHDVKKVIQH
LPPRRQSLLFSATMPDAIIKIADTLLHNPEKVEVTPVSSTAERIDQRICHVQRENKIPLL
LDILDENPEGLALVFSRTKHGANRIAERLTKKGVESAAIHGNKSQGARERALSQFKSGKI
RVLVATDIAARGIDVKGVTLVINYDMPVDSEAYVHRIGRTARAGADGLAFSLCEPAEHEN
LIKVERLIKKTIPVHSDHAYAIDPPKGPAPTNKSNSGGGRGNSGNGRPNRRRRGGRRPLG
NGSRNAQPATSGAA
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgcaatcatctgatatcagcttttcggagctcaagctcagcgccccgatccaagaggcc
ctgaaagcaaaaaactacacccacccgtcgccgatccaagcgcgtgccatcccgcacata
ctcgacggcagggacctcatcggctgcgcccaaaccggcactggcaagaccgcggcattc
gcacttccgattctccaactcctcaccgagtcgaaatcgcgccgcacgccacgccgccca
cgcgctctgatccttaccccgacccgcgagctggctgcccagatcatggacaacttcgag
gcatacggcagcaacctcccactgacctcccaggtcgtcttcggaggcgtcgggatcaac
ccgcaaatcaaccgcctgagcaagggcaccgacatccttgtcgccacaccgggccgcctc
ctcgacctcgcacaacaaggcaaagtcttcttcgattccgtggaaatcttcgtcctcgac
gaagccgaccgcatgctcgacatgggcttcatccacgatgtgaagaaggtcatccagcac
ctccccccacgccgtcagtcgttgctcttctcagcaaccatgcctgatgccatcatcaag
attgcggacacacttttgcacaaccccgaaaaagtcgaggtcacacccgtttcctccact
gccgagcgcatcgaccagcgcatctgccacgtccaacgtgagaacaagatcccactgctg
ctcgacattctggacgaaaacccagagggcctcgctctcgttttctcacgcaccaaacac
ggagccaatagaatcgccgagcgcctgaccaagaagggcgtcgagtccgcagccatccac
ggcaacaaatcccagggtgcccgggagcgcgcactttctcagttcaagtccggcaagatc
cgcgttctggtcgccacagacatcgccgcccgcggcatcgacgtcaaaggcgtgaccctc
gtgatcaactacgacatgccggtggactccgaagcctacgtccaccgcattggccgcacc
gcgcgcgccggagcagacggcctcgcgttctctctgtgcgaacctgccgagcatgaaaac
ctcatcaaggtcgaacgactgatcaagaagaccatcccggtccacagcgatcacgcctac
gctatcgacccaccgaaaggcccggcaccgaccaacaaatccaactccggtggtggacgc
ggcaattctggcaatggacgcccgaaccgcagacgccgcggcggccgcagaccgctcggc
aacggctcacgcaatgcccagcccgcaaccagcggagctgcctaa
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