Sulfuriroseicoccus oceanibius: G3M56_006420
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Entry
G3M56_006420 CDS
T07818
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
soa
Sulfuriroseicoccus oceanibius
Pathway
soa02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
soa00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
G3M56_006420 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
soa03021
]
G3M56_006420 (rpoD)
Transcription machinery [BR:
soa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
G3M56_006420 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
HC2
SHE3
Sigma70_ner
HSCB_C
CheZ
GCN5L1
PRESAN
DUF6765
Motif
Other DBs
NCBI-ProteinID:
QQL46212
UniProt:
A0A6B3L1P6
LinkDB
All DBs
Position
complement(1610047..1611939)
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AA seq
630 aa
AA seq
DB search
MADKRPSKKSTPAKPSAKKKSAAKKPAAKKSPAKKKPAAKKSTAKKPAAKKPVAETPEVT
PAEEPQAQPAPAAEAAPTGAAAEATTPSGPLTMESPEVKAKLREMIKLAKEQEYLTFDDI
NELLPEDVYQPELVDELLSRLRSMEFEVIDASDVDNFKRTNKTDDVDEDEEESPRRRAGQ
KQEGLDDPVRMYLKQMGQVPLLTREEEVEISKRIEKAESAVQRHLHHFGFASDSYLLMAE
KLETGRERFDRVILDKKVENRERYMNALPKLCETVRTMRGEVDRIHEKLFNATDSDVEAI
QKDMEEHIKKLSNKFKRFYYKQKVTEEFIDLVDSYMNEIDEIERMPAGGTKRLQRIASFR
RRTWCTPNEFRRRHSNVKQALADAHQAKSEMVEANLRLVISIAKKYTNRGLSFLDLIQEG
NMGLMKAVEKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLMRVQK
QLVQEYGREATPEEIAEEIHLPAERVNAVLKMAQQPVSLQAPVGDGEGETQIGDFIEDKA
SESPMELTSAALLKDRLRDVLDSLTEREREVLEQRFGLKDGYSRTLEEVGKQFRVTRERI
RQIEAKALRKMRHPTRIRKLEGFIETSAPY
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaaacgcccaagtaaaaaatccaccccggccaagccgagcgcgaagaaaaag
agcgcagcgaaaaagcccgcggccaaaaaatctcctgccaagaaaaagccggcggccaag
aagtcgacagcgaaaaagcctgcagctaagaagcctgtagccgaaactcccgaggtaaca
ccagccgaggaacctcaagcccagccagctcctgcagctgaagctgccccaacgggggct
gccgccgaggcaacaacaccatccggcccactcaccatggaatcgccggaggtgaaggca
aaactgcgcgagatgatcaaactcgccaaggagcaggagtacctcacgttcgacgatatc
aacgaactactgccggaagatgtctatcagccggaactcgtcgatgagttgctcagccgc
ctgcgcagcatggaatttgaggtgatcgacgccagcgatgtcgataatttcaaacgcacc
aacaagaccgacgacgtcgatgaggacgaggaagaaagccctcgtcgccgcgccggccaa
aaacaggaaggcctcgacgacccggtccgcatgtatttgaagcagatgggccaggtgcca
ctgctcacccgcgaggaggaagtcgagatctccaagcgcatcgaaaaagccgaaagcgcc
gtacaacgccacctccatcacttcggcttcgccagcgattcgtacctccttatggccgag
aagctggaaaccggccgcgaacgattcgaccgtgtgatcctcgacaaaaaagtcgaaaac
cgcgagcgctacatgaacgcgctgccaaaactttgcgaaaccgttcgcaccatgcgcggt
gaggtcgaccgcattcacgagaagctcttcaatgctacggactccgatgtggaagcgatc
caaaaggacatggaagagcacatcaagaagctctccaataagttcaagcgcttctactac
aagcagaaggtgaccgaagagttcatcgaccttgtggactcgtacatgaacgagatcgac
gagatcgagcgcatgcctgctggtggcaccaagcgcctgcagcgcattgcatcgttccgc
cgccggacctggtgcacgccgaacgagttccgccgccgccattccaacgtgaagcaggca
ttggcggatgcccaccaggccaagtccgaaatggtggaagccaacctgcgtctggtgatc
tcgattgccaaaaagtacaccaaccgcggactttcgttcctcgacctgattcaggaaggc
aacatgggcctgatgaaagcggtggagaagttcgagtaccgccgtggctacaagttctcc
acctacgccacatggtggatccgccaggccatcacccgctcgatcgccgaccaggcacgc
accatccgcatcccggtccacatgatcgagaccatcaacaagctgatgcgcgtgcagaag
cagttggtccaggaatacggtcgcgaagccaccccggaagaaatcgccgaggaaatccac
cttcctgccgagcgcgtcaatgccgtgctcaagatggcacaacaacccgtctcattgcag
gctccggtcggcgacggcgagggcgaaacccagatcggcgacttcattgaagacaaagcc
agcgaaagcccgatggaactgacttcggcagctctcctcaaggaccgcctgcgcgatgtg
ctcgactccctcaccgagcgcgaacgcgaagtgcttgagcagcgattcggtctgaaagat
ggctactcgcgcactctcgaggaagtcggcaagcagttccgggtcacccgcgagcgcatc
cgccagatcgaggcgaaggcgctgcgcaaaatgcgccacccgacccgcatccgtaagctg
gagggcttcatcgaaacctccgctccgtactaa
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