Sulfuriroseicoccus oceanibius: G3M56_006820
Help
Entry
G3M56_006820 CDS
T07818
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
soa
Sulfuriroseicoccus oceanibius
Pathway
soa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
soa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G3M56_006820 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
soa03400
]
G3M56_006820 (mfd)
Enzymes [BR:
soa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G3M56_006820 (mfd)
DNA repair and recombination proteins [BR:
soa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G3M56_006820 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
UB2H
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
QQL46280
UniProt:
A0A6B3KZX5
LinkDB
All DBs
Position
complement(1692864..1696205)
Genome browser
AA seq
1113 aa
AA seq
DB search
MPKKKSSSTARTTGAAKASGKGKAASSWQDRAIARMADTPGMRAITTALAHAEREMTVLA
PDIVPPAQAFTLATVVNQCRQSASVIWLVCNDLRHQERIQSELETWGLTAHFLPELENVQ
LEDAILDPEIGAERLNVLHAILKHRDKPAAKRYPLVVNLLASSLDDEVALPNQLVRKTLT
VRAGDELPPDELSDQLKAAGYEEHPQLFARGQFAVRGGIIDIFSFHADVPVRLEYFDTEL
ESLREFDLNSQTSISKVKEAIIVLSDGEQESAAPLRSWIESKDDLVIGCDIAEPPVDLCI
CDDPPESATDQPMLEIDDLTTLGSPVGSFDVGEMLLSEAKHAAFVKQVREWNQTGWAVDM
VFSNEGEIERFYELLSDAPDVPALIGCHIGKLSFGFTVRSARLAVLSADEVFGRFQVTRA
RKRFNREVRQRRVGHAVDIKELQPGDHVVHIDYGIARFRGLVPKPDATEDDAASEVLVLE
YANDARLYVPLDQVHLVSRYVGTSAKPPALHTLGDQRWQRQRKKAEKSIFDYAAKMLAIQ
AEREQTKGLSHSADNKWQWDFEHSFPFRETTDQLAAIRDTKADMESSRPMDRLICGDVGF
GKTEVAIRAMFKCVMGGHQAVLLCPTTVLAQQHYENFRRRMSDYPVTIALLSRLQKPAEQ
RKILKGLADGSIDMVIGTHRVASADIEYKKLGLAVVDEEQRFGVRHKDAFKERFRLIDVL
TLSATPIPRTLYFSLMGAREMSTIETPPPNRLPVQTTVCPYDERIIRTALQRELKRGGQV
YFLHNRVKTIEKMKEKLQALAPDARIVIGHGQMDSRELEDVMHTFVRGDADVLIATTIIE
SGIDIPNANTIFIDRADRFGLADLYQLRGRVGRSGHKAYAYLLLPRDMLTVGDARKRMNA
IREYSTLGAGFKIAMRDLEIRGAGNLLGTQQSGHIAAIGFDMYCQLLKQSIAQLSGKPSG
GRADVPLHIDFLAFSEADYVRSRKPVKREKNDQPKAKKLPAFLPSDYITDPKLRIAAYRM
LAECVSQSEVDDLEKNWVDRFGKLPPAASHLLLANQLRVAAAQANVSAVEIKNDRLMLTK
NRDYILINGKFPRLEAKGAPAKLRQAIKMVKTL
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
gtgcccaagaaaaagtccagctccactgcccgcaccaccggcgccgccaaggcatccggc
aagggcaaggccgcgtcgagctggcaagaccgcgcgatcgcccgcatggcggacacgccg
ggcatgcgcgccattaccaccgcgctggcacatgccgaacgggagatgaccgtattggct
cccgacatcgttcctcccgcccaggcattcacgttggcgacggtcgttaaccaatgccgc
caatccgcctcggtcatttggctggtctgcaatgacctgcgccaccaggaacgcatccaa
agcgaactcgaaacctggggactcaccgctcacttcctccccgagctggaaaacgtccaa
ctcgaagacgccatcctcgacccggaaatcggcgcggaacgactcaacgtcctccacgcc
atcctcaaacaccgcgacaagccagcggcaaaacgctacccactcgtcgtcaacctgctc
gccagctcgctcgacgacgaggtcgccctacccaaccaactggtgcgcaaaacgctcacc
gtccgcgccggcgacgagttgccaccagacgaactcagcgaccaactcaaggcagccggc
tacgaggagcacccgcagttgtttgcccgtgggcagttcgcggtgcgcggcggcatcatc
gacattttctcgttccatgccgacgtcccggtccgcctcgagtacttcgatacggaactc
gaaagcctgcgcgagttcgacctcaactcccaaacctccatcagcaaggtcaaagaagcc
atcatcgtgctgtcggatggcgaacaagaatccgccgcaccactgcgctcgtggatcgaa
tcaaaggacgatcttgtcatcggctgcgacatcgcggagccaccggtggatctttgcatc
tgtgacgacccaccggagtccgccacagaccaaccaatgctcgaaatcgacgacctgacc
acactcgggtcgccggtcgggtcgttcgacgtcggggaaatgctgctctcagaagcgaag
cacgccgcgttcgtcaaacaagtccgcgaatggaaccagaccggctgggcggtggacatg
gtcttctccaatgaaggggaaatcgagcgcttctacgagctgctctcggatgcaccggat
gtgcccgcgttgatcggctgccacatcggcaagctctcgttcggcttcaccgtgcgctcg
gcccgtctggcggtactctcggccgacgaggttttcggtcgattccaggtgacccgcgcc
cgcaagcgcttcaaccgcgaagtgcgtcagcgccgggtaggtcacgcggtggatatcaaa
gaactgcaacccggtgaccacgtcgtccacatcgactacgggattgccaggttccgtggg
ctcgttccaaagccagacgccaccgaagacgatgccgccagcgaagtgttggtcctcgag
tacgccaacgacgcccgcctctacgtcccgctcgaccaggtccacctcgtatcgcgctac
gtcggcacgtcggccaagccgccagccctccacacgctcggcgaccagcgctggcaacgc
caacgcaagaaggcggagaagtcgatctttgactatgccgccaagatgctcgctatccag
gcggagcgcgagcaaaccaaaggactgagccactccgccgacaacaaatggcagtgggat
ttcgagcattcgttcccattccgcgaaaccactgaccagcttgcagccatccgcgacacc
aaggccgatatggaatcgtcacgcccgatggaccgcctcatctgcggcgatgtcgggttc
ggcaaaaccgaggtcgccatccgcgccatgttcaaatgcgtcatgggcggccaccaggcg
gtgctgctttgcccgaccaccgtcctggcgcaacagcactacgaaaacttccgccgccgg
atgtcggactaccccgtcaccatcgccctgctctcgcgcctccagaagcccgcggaacaa
cgcaagatcctcaaaggcctcgccgatgggtcgatcgacatggtcatcggcacccaccgc
gtcgcatccgcagacatcgaatacaagaagctcgggctcgccgtggtcgacgaagaacaa
cgcttcggcgtgcgccacaaggacgcattcaaggagcgcttccgcctcatcgatgtgctc
acgctttccgccacccccatcccgcgcacgctctacttctcactcatgggcgcacgggaa
atgagcacgatcgaaaccccgccacccaaccgcctgccggtgcaaaccacggtctgtccg
tacgatgaacgcatcatccgcaccgccctccagcgcgaactcaagcgcggcggtcaggtc
tatttcctccacaaccgggtcaagaccatcgagaagatgaaggagaagctgcaggcgctc
gccccggacgcccgcattgtcatcggccacggccaaatggacagtcgcgaactggaggac
gtgatgcacaccttcgtccgcggtgatgccgatgtcctcatcgccaccaccatcattgaa
tcgggcatcgacatccctaacgcgaacacgatcttcatcgaccgcgcggatcgctttggc
ctggcggacctctaccaactgcgcggacgcgtcggccgctcgggccacaaagcctacgcc
tacctactgctgccgcgcgacatgcttaccgtcggcgacgcccgcaagcggatgaacgcc
atccgcgaatactcgacactcggagctgggttcaagatcgccatgcgcgacttggaaatc
cgcggcgccggcaatttgctaggcacccaacaatccggacacatcgccgccatcggcttc
gacatgtattgccaactgctcaaacagtcgatcgcccaactcagcgggaaaccaagtggt
ggccgcgccgacgtgccactccacatcgacttcctcgcattctcggaggccgactacgtg
cgctcacgcaaaccggtaaaacgcgagaagaacgaccagccgaaggccaaaaagctcccc
gcattcctcccatcggattacatcaccgatccgaaactacgcatcgccgcctaccgcatg
ctcgctgaatgcgtaagccaaagcgaagtcgatgacttggagaaaaactgggtcgatcgt
ttcggcaagctcccccctgccgcatcccatttgctgctcgccaaccaactccgcgtcgcc
gccgcccaagccaatgtcagcgccgtcgaaatcaaaaacgaccgcctgatgctcacaaag
aaccgcgactacatcttgatcaacggcaagttcccccgcctcgaagcaaaaggtgcccca
gccaaactccgccaagccatcaagatggtgaagacgctgtag
DBGET
integrated database retrieval system
