Sulfuriroseicoccus oceanibius: G3M56_014265
Help
Entry
G3M56_014265 CDS
T07818
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
soa
Sulfuriroseicoccus oceanibius
Pathway
soa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G3M56_014265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soa03019
]
G3M56_014265
03400 DNA repair and recombination proteins [BR:
soa03400
]
G3M56_014265
Enzymes [BR:
soa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G3M56_014265
Messenger RNA biogenesis [BR:
soa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G3M56_014265
DNA repair and recombination proteins [BR:
soa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
G3M56_014265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
DprA_WH
TniB
Motif
Other DBs
NCBI-ProteinID:
QQL45006
UniProt:
A0A6B3LD29
LinkDB
All DBs
Position
3489913..3491832
Genome browser
AA seq
639 aa
AA seq
DB search
MSQITDTLKQRFGHDQFRDGQREIVEGLVAGRSMLAVFPTGGGKSLCYQLPALLLDGVTL
VISPLIALMKDQVDALRSRGIHAARLDSSLTHDEYGEVMRDLANGSLKLLYVAPERLANE
GFRQKLASLKIAMVAIDEAHCISEWGHNFRPDYLKLAKLCHTLRVPRVLALTATATPAVA
NDIRAAFDIAPDDHIQLSFHRHNLDLRVTPLTDSERPPYLLERLKHTDGAVIVYVTLQHT
AERIATYLNRNGVPAQAYHAGLPAEQRAAAQDGFMTGNIRIIVATIAFGMGIDKADIRTV
IHYNLPKSLENYSQEIGRAGRDGKDSVCELLACRDDLTTLENFTYGDTPEPGATQGLIDR
VLRLGDEFDISTYDLSYASDVRLLVVSTLLTYLEMDEWIEATRPFYSVYQVKIARDFDSI
VAGYDDRRKAFLRKIFDAAEHKRSWIHFHIDDVAQATGEPRDRIVAALTYLEEAGDIALR
LTGVRQGYRLIRKPDNLRDVGRRMNERFAHREQSDLDRIAQVVELAEQSGCITNFLTSHF
GESLDQPCGHCCRCRGTSATPLPGANPEPATIEERQQIDQLIRQNHAALRTPRQLARFLT
GLSSPATTRARLTRDDTFALLERLPFSDTLTVAESMMGA
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgagccagatcacagacaccctcaaacagcgcttcggtcatgatcagttccgcgacggc
cagcgggaaatcgtcgaaggcctggtcgccggcagatcgatgctcgcggttttcccgacc
ggaggcggcaaatccctctgctaccagctccccgcattgttgctggacggcgtgaccttg
gtgatctctccgctgattgcgctgatgaaagaccaagtcgatgcgctgcgcagccgaggc
attcatgccgctcggctagactcctcactcacgcacgacgagtacggcgaggtaatgcgc
gacttggccaatgggtcactgaaacttctctacgttgcgccagaacgtctggccaacgag
ggattccggcaaaagctcgcctcactcaagatcgccatggtcgccatcgatgaggcgcac
tgcatctcagagtgggggcacaacttccgccccgactacctcaagctggcaaagctctgc
cacaccctgcgagtgccccgcgttctggcgctgaccgctaccgccacccccgcggtcgcc
aatgacatccgcgccgcattcgacatcgctcccgacgaccacatccagctctcgttccac
cgccacaacctcgacctacgggtgaccccactcaccgattcggaacgccctccttatctc
ctcgagcggctcaagcacaccgatggcgcagtcatcgtctacgtcacactgcagcacacc
gccgagcgcatcgccacctacctgaaccgcaacggagtcccggcacaagcctaccacgcc
ggcctccccgccgagcaacgcgccgcagcccaggatgggttcatgaccggcaacatccgc
atcatcgtcgcgaccatcgcgttcggcatggggatcgacaaggcagacatccgcacggtg
atccattacaacctgccaaagtctctggaaaactactcgcaggagatcgggcgcgccggc
cgcgacggcaaggattcggtgtgtgagctcctcgcctgtcgcgacgacctcaccacactc
gaaaacttcacctacggcgacaccccggaacccggagccacccagggactgatcgaccgt
gtcctgcgcctcggtgatgagttcgacatctcaacctacgacctctcctatgccagcgac
gtccgccttttggtcgtctccactttactcacctacctggaaatggacgagtggatcgag
gcgactcgcccattttactcggtctaccaagtgaaaatcgcacgggacttcgattcgatc
gtcgccggctacgacgaccgccgcaaagcattcttgcgcaagatcttcgacgccgcagaa
cacaaacgctcgtggattcattttcacatcgatgacgtggcccaagccaccggagaaccc
cgcgaccgcatcgtcgccgcactcacctacctcgaggaagccggcgacatcgcactacgc
ctcaccggcgtccgccagggctaccgcctgatacgcaagccagacaacctgcgcgacgtc
ggacgccgcatgaacgagcgcttcgcccaccgcgaacaaagcgacctcgaccgcatcgcc
caggttgtggaactcgcagagcaatctggctgcatcaccaacttcctcaccagtcacttc
ggcgaatcgctggatcagccatgcggccactgctgccgctgcaggggaacctcagccaca
ccattgcccggagccaacccagagccagccaccatcgaggagcgccagcaaatcgaccag
ctaatccgccaaaaccacgcagccctgcgcaccccgcgccaactcgcccgcttcctcacc
ggcctcagcagccctgccaccacccgcgcccgcctcaccagagacgacaccttcgccctc
ctcgagcgcctcccattctccgacacactgaccgtcgcagaatccatgatgggcgcctag
DBGET
integrated database retrieval system
