Solibacillus sp. R5-41: CSE16_00315
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Entry
CSE16_00315 CDS
T05144
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sob
Solibacillus sp. R5-41
Pathway
sob03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CSE16_00315 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sob03400
]
CSE16_00315 (mfd)
Enzymes [BR:
sob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CSE16_00315 (mfd)
DNA repair and recombination proteins [BR:
sob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CSE16_00315 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
AAA_16
RecG_dom3_C
UB2H
UBA
SecA_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ATP38616
UniProt:
A0A2D1SNG3
LinkDB
All DBs
Position
65952..69461
Genome browser
AA seq
1169 aa
AA seq
DB search
MDTFHQLFLQDKQIHNLLQQIKDGSANEQLITGLTGSARPALIQSIFKETKKSIYIISPN
LLQAQKLVDDLGSLIGEEWIHYYPAEEFIAANMTTSSPELRAQRIATIGRLVKGELGIYV
IPVAGMRKLLNRPMDWVNNDLQTAIGQELDIEQWLHQLVEMGYTRSQMVTTPGEFAMRGG
IMDIYPPYLESPIRIELFDTEVDSIRTFSADDQRSIEKREHIEILPATEILLAASERLTI
AERLESALANSLKKVKKKETQELLLQSIGQDIELLRQGQLPDHIAKYGSLLFERPAFLGD
YFAKDGLILFDELGRIQEVMDAWEREENEWFLSLIEEGKMLHEVKPSYSLKEVLAMLEQP
TLYFALFTRTFSGIKFKKTTNFSCKPMQQFHGQIALLQNEIARWQQENYTVLITVTSDER
LKSMQKMLDDYQISTAIGFHKEPGIYIIHATLVAGFELPLQKIAVITEDELFKQQQKKKA
RPQKMTNAERIKSYTEIKPGDYVVHVHHGIGKYIGIETLVIDGIHQDYLHVRYRADDKLF
VPVDQIDLIQRYVGAEDKETKLHKLGGPEWKKTKAKVSSAVQDIADDLIKLYAQREAEVG
FAFAPDTDEQRNFEDAFPYEETEDQLRTIIEVKHDMERERPMDRLVCGDVGYGKTEVAIR
AAFKAILDGKQVAFLVPTTILAQQHYETIHKRFEEFAMNVGLLSRFRTKKQQTETLKGLR
EGTVDIVIGTHRVLSKDVVYQNLGLLIVDEEQRFGVTHKEKIKQLKTNIDVLTLTATPIP
RTLHMSMVGVRDLSVIETPPQNRFPVQTYVMEHSGALVREAIEREMARGGQTFYLYNRVE
DMARRVEEIQMLVPDARVAFAHGRMTEAQLESVILSFIDGEYDVLVTTTIIETGVDIPNV
NTLIVHDADRMGLSQLYQLRGRVGRSSRIAYAYFMYERDKVLSDVAEQRLQAVKEFTELG
SGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLEEAVEERRSGVKREEKVDIEI
ILQVDAYIPDAYIPDGYQKIQMYKRIKAMERVEDYLEIIDEMQDRFGDIPPETERLMRIA
RMKVWAAQADVLSIKEKQQVASITLSEQGTALSDGAKIVEQSMEFGQAVGFGMEGTQLIV
TVNYKKCGKYSPLEVLEKMMEIISNAKKA
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
gtggatacttttcatcagttatttttacaagataaacagattcataatttactccagcaa
ataaaagatggttcagcaaatgagcaattgattactggactaacaggtagtgcaaggcca
gcacttattcaatcgatttttaaagaaacaaagaaatccatttatatcatttcaccgaat
ttattgcaggcacaaaaactcgtagatgatctaggctctttaatcggtgaggaatggatt
cattattatcctgctgaggaatttatagcagcaaatatgacgacatcatcaccagagttg
cgagcacagcgtatcgcgacgattggtcgactggtgaagggtgaactgggaatttacgtc
attccagtagcagggatgcgaaaattattaaataggccaatggattgggtcaacaatgat
ttacaaacggccattggtcaagaactggacattgaacaatggcttcaccaacttgttgaa
atgggatatacacgcagtcaaatggtgacaacacccggggaatttgcgatgcgtgggggc
ataatggacatttatccaccttatttagaatccccaatccgaattgaactatttgataca
gaagtcgattcaattcgtaccttttctgcagatgaccagcgttctattgaaaagcgagag
cacattgaaattttaccagcaactgaaattttactggcagcaagtgagcgactgacgatt
gcagagcgcctagagtcagcacttgcgaatagcttaaaaaaggtgaaaaagaaggaaact
caagagctccttttacaaagtatcgggcaggatattgaattattacgccaaggacaatta
ccggaccatattgctaaatatggctccttattatttgagcgccctgcttttttaggggat
tatttcgcgaaagatgggctcattttatttgatgaattgggtcgtattcaagaagtgatg
gatgcatgggaacgagaggaaaatgaatggtttttatccttaattgaagagggaaaaatg
ctccatgaggtaaaaccttcatattcgttaaaggaagtattggcgatgctagagcagcca
acgctttattttgctctgtttacacgtactttttcaggtattaaatttaagaaaactacg
aatttttcatgtaagccgatgcaacaatttcacgggcaaattgccttattacaaaatgaa
attgcgcgctggcagcaggaaaattatacggttcttattacagtcacaagtgatgaacgc
ttaaaatccatgcagaagatgctcgatgattatcaaatttctacagcaattggatttcat
aaggaaccgggcatttatattattcatgcaacgttggtagctggttttgaactaccttta
caaaaaattgcggtcattacagaggatgaattgttcaagcaacagcaaaagaaaaaagca
cgtccacaaaaaatgacgaatgccgagcgtattaaatcatataccgaaattaaaccaggc
gactatgttgtccatgtgcatcatggtatcgggaagtatattggaattgaaacgcttgtc
attgatggtatacatcaagattatttacatgtgcgctatcgtgcagatgataaactattt
gtgcccgttgatcaaattgatttaattcagcgttatgttggagctgaagataaagaaacg
aaacttcataagctaggcggaccggaatggaaaaagacaaaggcaaaagtatcgtctgcg
gtacaagatattgcggatgatttaattaagctttatgcccagcgtgaggcagaagtaggc
tttgcctttgctccggatacagatgagcagcgtaattttgaggatgcttttccatatgaa
gagacagaggatcagttacgtacaattatcgaagtgaaacatgatatggaacgtgaacga
ccaatggaccgacttgtttgtggagatgttgggtatggtaaaactgaagtggccattcgt
gcagcatttaaagcgatacttgatggtaagcaagtagcattcttagtaccgacaaccata
ttagcgcaacaacattacgaaacgattcataagcgttttgaggaatttgcgatgaatgtt
ggcttgttaagtcgcttccgtacgaaaaagcagcaaacagaaacattaaaagggttacgt
gaaggaacggttgatattgtaattggcacgcatcgtgttttgtccaaggacgttgtgtat
caaaatttaggtttactaattgttgatgaagagcaacgttttggtgtcacgcacaaggaa
aaaattaagcagctgaaaacgaatattgatgtactgacactgacagcaacgccaattcca
cgtacacttcatatgtcgatggttggtgtgcgtgatttatcggtcattgaaacgccacct
caaaaccgtttccctgtacaaacctatgtgatggagcatagtggggcccttgtccgcgaa
gccattgaacgtgaaatggcgcgcggcggacaaacgttttatttatacaatcgggtagaa
gatatggctagacgggtagaggaaattcaaatgctcgtaccggatgcgcgtgttgctttt
gcgcatggtcgaatgacagaggcacagttagagtctgttattttatcctttattgacggg
gagtatgacgtgcttgtgacgacgacgattattgaaacgggtgtcgatattccaaatgta
aatacattaattgtgcatgatgccgatcgcatgggattatcacagctataccaattgcgc
ggccgtgttggtcgttcaagtcggattgcgtatgcctattttatgtacgagcgtgataaa
gtgttgtcagatgttgcagagcagcgtttgcaggcggtgaaagaatttacggagcttggt
tcgggctttaaaattgcgatgcgtgacttatcaatacgtggagcaggaaatttactcggt
gcccaacagcatggctttattgattcggtcggctttgatttatattcgcaaatgcttgaa
gaagctgtggaagaacgtcgtagtggtgtgaagcgtgaagaaaaagttgatattgaaatc
attctccaggtcgatgcgtatattccagatgcatatattccggatggatatcaaaaaatt
caaatgtataagagaataaaagcaatggaacgtgtggaagattacttggaaattatcgat
gaaatgcaagaccgttttggcgatattccgcctgaaacggagcgcttaatgcgaattgct
cgaatgaaggtttgggcagctcaggctgatgtcttatccattaaagaaaaacaacaggtt
gcttcaattacattatctgagcaagggacagcactgtcagatggtgcaaaaattgtggag
cagtcgatggaatttgggcaagcagttggcttcggaatggaaggcactcaattgattgta
acagtgaattataaaaaatgtggaaaatattcaccgttggaagtacttgaaaagatgatg
gaaattatttcgaacgcaaaaaaggcataa
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integrated database retrieval system
