Solibacillus sp. R5-41: CSE16_03635
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Entry
CSE16_03635 CDS
T05144
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sob
Solibacillus sp. R5-41
Pathway
sob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CSE16_03635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sob03019
]
CSE16_03635
Messenger RNA biogenesis [BR:
sob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CSE16_03635
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF4453
DUF5548
CFAP54_N
DUF5532
Motif
Other DBs
NCBI-ProteinID:
ATP39195
LinkDB
All DBs
Position
complement(801675..803342)
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AA seq
555 aa
AA seq
DB search
MKFVKNDQAAVFALGGLGEIGKNTYGVQFQDEIILIDAGIKFPEDDLLGIDYVIPDYTYL
VRNVDKIKGLFITHGHEDHIGGIPYLLRQVNVPVYGGKLALGLLRNKLDEHGLLRTTKLI
EFKEDDIIKFRKTSVSFFRTTHSIPDAFGVVVKTPPGNIVHTGDFKFDFTPVGEPANLTK
MAEIGRDGVLCLLSDSTNAEKTEFTMSERTVGKSIDEIFRKVDGRIIFATFASNIHRLQQ
ATDAAVKYGRKVAVFGRSMDNAITIGRELGYITAPKETFIDVQSLNRLPANEVMILCTGS
QGEPMAALSRIANGTHRQIQIQPGDTVVFSSSPVPGNTMSVNKIINLLFRAGAEVIHGAL
NNIHTSGHGSQQEQKLMLRLMKPKFFMPIHGEYRMLKIHTELAEACEVPLENSFVMDNGE
VLALSPNEAHVAGRIPSGDVYIDGNGIGDIGNIVLRDRRILSEEGLVIVVVSVDMEKNKL
VSGPDIISRGFVYMRESGTMINEAQKMLNHHLNSSIQEKDTQWNDLKNEITDVLGPYLYE
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcgttaagaatgatcaagcagctgttttcgcgctcggcggactgggcgaaatc
ggcaagaacacatatggagttcaattccaggatgaaattattttaattgatgctggtatt
aaattcccggaagatgatttactcggcattgactacgttatcccagattatacttattta
gtacgaaacgttgacaaaataaaagggcttttcattacacatggtcatgaagatcatatt
ggtggtattccctatttattacgtcaagtaaatgtacctgtatatggcgggaagttggcg
ctaggtctacttcgtaacaaattagatgagcacggcttattacgcacgacaaagctaatt
gaatttaaagaagatgacattatcaaatttagaaaaacatctgttagcttcttccgtaca
acgcacagtattcctgacgcatttggagttgttgtaaaaacaccaccaggtaatattgtc
catacaggagattttaaatttgactttacaccggttggcgagccagcaaacttaacaaaa
atggctgaaatcggtcgtgatggtgtactatgcttactttctgatagtacaaacgctgaa
aaaacagaattcacgatgtctgaacgtacagtcgggaaaagtatcgacgaaattttccgc
aaagtggatggccgtattatttttgcaacatttgcatcgaatattcatcgcttacaacaa
gctacggatgcagccgtaaagtacggacgtaaagtggctgtatttggtcgttcaatggac
aatgcgattacaattggacgtgaactcggttatattaccgcaccgaaagaaacgttcatt
gatgtgcaaagcttaaatcgtctaccagccaatgaagtgatgattttatgtaccggttct
caaggggaaccaatggctgcattatcacgtatcgcaaatggtacacatcgtcaaattcaa
atccaaccgggtgatacagttgtattctcatcttctcctgttccaggtaatacgatgagc
gtaaacaaaattatcaacttattattccgtgctggtgctgaagtcattcacggagcatta
aataatattcatacatctggtcatggttctcaacaagaacaaaaattaatgcttcgatta
atgaagccgaagtttttcatgccgatacacggtgaatatcgtatgttaaaaatccatacg
gaacttgctgaagcatgtgaagttccattagaaaactcatttgtcatggataacggtgag
gtattagcattaagtccaaatgaggcgcatgttgctggtcgaattccttcaggtgatgta
tatattgatggtaatggaatcggagatataggtaatattgttctacgcgatcgtcgcata
ctttcggaagaaggtttagtcatcgttgttgtaagtgtcgatatggaaaaaaataaactt
gtgtcaggtccagatattatttctcgaggattcgtctacatgcgtgaatcaggtacgatg
attaatgaagcgcaaaagatgttaaaccatcatttaaatagcagtatccaagaaaaagat
acacaatggaatgaccttaaaaatgaaattacagacgttttaggaccgtatttatacgaa
aaaacaaagcgtcgtcccatgattttaccaatcattatggaagtataa
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