Solibacillus sp. R5-41: CSE16_19655
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Entry
CSE16_19655 CDS
T05144
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sob
Solibacillus sp. R5-41
Pathway
sob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CSE16_19655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sob03019
]
CSE16_19655
03009 Ribosome biogenesis [BR:
sob03009
]
CSE16_19655
Enzymes [BR:
sob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CSE16_19655
Messenger RNA biogenesis [BR:
sob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CSE16_19655
Ribosome biogenesis [BR:
sob03009
]
Prokaryotic type
rRNA helicases
CSE16_19655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
ATP42047
LinkDB
All DBs
Position
complement(3991676..3993226)
Genome browser
AA seq
516 aa
AA seq
DB search
MTNFSELNISESTLRSIKRMGFEEATPIQEGTITFAMDGRDVLGQAQTGTGKTAAFGIPL
IEKIDPKNPNIQALVIAPTRELAIQVSEELYKLGYDKRVKLLSVYGGQEIGRQIRALKNH
PQIIVGTPGRIQDHINRRTLKLDEVQTLVLDEADEMLNMGFIDDINAILESVPDSRQTLL
FSATMPPAIRKIAETFMNNPEVVKIKAKELTMENIEQFFVKATEREKFDALSRLLDSQKP
ELAIIFGRTKRRVDELSQALGLRGFLAEGIHGDLSQAKRISVLRQFKEGKIDILIATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGVAVTFVTPREMGYLRIVEETTK
KRMTPLRTPTSEEALVGLQEDAMKNLVNLVQNEDIGKYRELAARLLENNEALDLVAAALK
SITKEPDATPITLSEERPLPMRRDRSNGGGGRGGNDRGRSSRGGNDRRGGGGGGGDRRRE
GGGRRDSGRREGGNGGGRREGSAPNRDRRPRQRRED
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaatttttcagaattaaatattagtgaatctacattacgttcaattaaacgtatg
ggatttgaagaagcaacaccaattcaagagggtacaattacatttgcaatggatggccgt
gacgtattaggtcaagcgcaaactggtactggtaaaacagctgcattcggtattccgtta
atcgagaagatcgatccaaaaaacccaaacatccaagcattagttattgctccaactcgt
gagttagcaatccaagtttcagaagaactttataaattaggttatgacaagcgcgtaaaa
ttattatcagtttacggtggtcaagaaattggtcgtcaaatccgtgcgcttaaaaaccac
cctcaaatcatcgtgggtacaccaggtcgtattcaagaccatattaaccgtcgtacatta
aagttagacgaagtacaaacattagtattagacgaagcagatgaaatgttaaacatgggc
tttattgatgatattaatgccattttagaatctgttccagatagtcgccaaacattatta
ttctcagctacaatgcctccagcaatccgtaaaattgctgagacattcatgaataaccct
gaagtggttaaaatcaaagcaaaagaattaacaatggaaaacattgagcagtttttcgta
aaagctactgagcgcgagaaattcgacgcactttctcgtttattagattctcaaaagcca
gaattagcaatcatcttcggtcgtacaaaacgtcgtgtcgatgagttaagccaagcatta
ggtttacgtggtttccttgcagaaggcattcacggtgacttaagccaagcaaaacgtatc
tcagttttacgtcaatttaaagaaggtaaaattgatattttaatcgcaacagatgtagcg
gctcgtggtttagatatttcgggtgtaacacatgtttacaactttgatattccacaagat
ccagaatcatatgttcaccgtattggtcgtacaggccgtgctggtaaatcaggtgttgct
gtaacatttgtaacaccacgtgaaatgggttacttacgtatcgttgaagaaacaacgaaa
aaacgtatgacaccattacgtactccaacatcagaggaagcattagtaggtttacaagaa
gatgcaatgaaaaatctggtgaacctagtacaaaatgaagacatcggcaaataccgtgaa
ttagctgctcgattattagaaaataatgaagcgcttgatttagtagctgctgcattaaaa
tcaattacaaaagagccagatgcaacaccaatcacattgtcagaagagcgtccattacca
atgcgtcgtgaccgttctaatggcggcggtggtcgtggtggtaatgatcgcggtcgctca
agtcgcggtggtaatgaccgtcgtggcggtggcggtggcggtggagatcgtcgtcgtgaa
ggtggcggacgccgtgattcaggtcgtcgtgaaggtggcaatggcggtggtcgtcgtgaa
ggaagtgctcctaatcgcgatcgtcgtcctcgtcaacgtcgcgaagactaa
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