Solibacillus sp. R5-41: CSE16_20640
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Entry
CSE16_20640 CDS
T05144
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sob
Solibacillus sp. R5-41
Pathway
sob03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sob00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CSE16_20640 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sob03021
]
CSE16_20640 (rpoB)
03400 DNA repair and recombination proteins [BR:
sob03400
]
CSE16_20640 (rpoB)
Enzymes [BR:
sob01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CSE16_20640 (rpoB)
Transcription machinery [BR:
sob03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CSE16_20640 (rpoB)
DNA repair and recombination proteins [BR:
sob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CSE16_20640 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
ATP42223
UniProt:
A0A2D1SYT1
LinkDB
All DBs
Position
complement(4179894..4183454)
Genome browser
AA seq
1186 aa
AA seq
DB search
MTGQLVQYGQHRQRRSFARISEVLELPNLIEIQTASYEWFLEEGLREMFHDISPIEDFTG
NLSLEFVDYKLGNPKYDVDECKERDVTYAAPLRVKVRLHNKETKEVKEQEVFMGDFPLMT
ETGTFIINGAERVIVSQLVRSPSVYFHDKTDKNGKKGFGATVIPNRGAWLEYEIDAKDVV
YVRIDRTRKLPATVLLRALGFGSDQEILDIIGDNEYLRNTLEKDNTESTEKALLEIYERL
RPGEPPTVESAKNLLYSRFFDAKRYDLANVGRYKMNKKLHIKNRLFNQTIAETLVDSETG
EILVEAGTLLDRRTLDKLIPYLEAGTGFRTLTQVGGVLEEDITIQSIKIFAPNDEAQKEI
NVISNAYIDEEVKNITPADVIASVSYFFNLLYGVGNTDDIDHLGNRRLRSVGELLQNQFR
IGLSRMERVVRERMSINDTAAIVPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAELT
HKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNKFG
FIETPYRRVDPNTSAVTKDIHYLTADEEDNYVVAQANSLLNEDGTFVKEEVVGRFRGDNT
VFSKDRIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLYPNAPYVGTG
MEHVDARDSGAAVIAKFDGIVEHVEARSIHVRRIETIEGKEVKGDLTKYKLQKFIRSNQG
TSYNQRPIVKIGDRVKPRDILADGPSMEKGELALGQNVLIAFMTWDGFNYEDAVIMSERL
VKDDVYTSVHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDDRGIIRIGAEVRDGDI
LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIILDVKVFNREDGDEL
PPGVNQLVRAYIVQKRKIRVGDKMAGRHGNKGVISRILPEEDMPFMPDGTPVDIMLNPLG
VPSRMNIGQVLELHLGMAARYLGVHMATPVFDGANEDDVWETMEEAGMDRDGKTTLYDGR
SGEPFDSRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVW
ALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGESVPEPGVPESFKVLIKELQSLGMD
VKMLTINDEEVELRDLDDEEEVTAPVPEMENPKPADDKEDPVESIE
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
ttgacaggtcaactagttcagtacggacaacaccgccagcgtagaagctttgcgcgtatt
agtgaggtgctggaacttccgaatttaatcgaaatccaaacagcatcttatgagtggttc
cttgaagaagggttgcgtgagatgttccacgacatttctccaatcgaagattttacaggt
aatctttcattagaattcgtcgactacaaattaggaaatcctaagtatgatgttgatgaa
tgtaaagaacgtgacgtaacttatgctgcaccattgcgcgtaaaagtacgtttacacaac
aaagaaacaaaagaagtaaaagaacaagaagtcttcatgggtgatttcccattaatgacg
gaaacaggcacgtttattattaatggtgctgagcgcgttatcgtttcgcaattagttcgt
tctccaagtgtatatttccacgacaaaacggacaaaaacggtaaaaaaggttttggcgca
acagtgattccaaaccgtggtgcatggttagaatacgaaattgatgcaaaggatgttgta
tacgttcgtatcgatcgtacacgtaaacttccagcaacagtattattacgtgcattaggt
ttcggttcagatcaagaaattttagatatcattggtgacaatgaatacttacgtaacacg
cttgaaaaagataacacagaaagcactgaaaaagcgcttcttgaaatctatgagcgtttg
cgtccaggtgagccaccaacagttgaatcagcgaagaaccttttatattctcgcttcttt
gacgcaaagcgctatgacttggcgaatgttggtcgttacaaaatgaacaaaaagcttcac
attaagaatcgtctgtttaaccaaacgattgctgaaacacttgtagattcagaaacaggt
gagattcttgtagaagcaggtacattattagatcgtcgtactttagataagttaatccct
tatttagaagcgggtacgggcttccgtacactaacacaagttggtggtgtattagaagag
gatattacaatccaatcgatcaaaattttcgcaccgaatgacgaagctcaaaaagaaatt
aacgttatttcaaacgcatatatcgatgaagaagtgaagaatattacaccagctgatgta
atcgcttctgtatcatacttcttcaacttattatatggcgtagggaatacagatgatatt
gatcacttaggtaatcgtcgtctacgttcagttggtgagcttttacaaaaccaattccgt
atcggtttatctcgtatggaacgtgttgtacgtgagcgtatgtcaatcaatgatacagct
gctatcgtgccacaacaattaattaatatccgtccagtaattgcgtcaattaaagagttc
tttggtagctcgcaattatcgcaattcatggaccaaacaaacccacttgcagaattaacg
cataaacgtcgtctatctgcattaggacctggtggtttaactcgtgagcgtgctggtatg
gaagtacgtgacgttcactattctcactatggtcgtatgtgtccgattgaaacaccagag
ggaccaaacattggtttaattaactcgctttcatcgttcgcaaaagtaaataaattcggc
ttcatcgaaacgccgtatcgtcgtgttgatccaaacacaagtgctgtaacgaaggatatt
cattacttaacggctgatgaagaagataactatgtagttgcacaagcaaactctttatta
aatgaagatggtactttcgtgaaggaagaagttgtaggacgcttccgtggagataacact
gtatttagtaaagaccgtatcgactacatggacgtatcaccaaaacaggttgtatctgct
gccactgcatgtatcccgttcttagaaaacgatgactctaaccgtgcgttaatgggtgcg
aacatgcaacgtcaagcggttccattactttatccaaatgcaccatatgtaggtacaggt
atggaacacgtagatgcacgtgactcaggtgctgcagtcattgcaaaattcgacggtatt
gttgaacatgttgaagcacgttctattcacgttcgtcgtattgaaacaattgaaggcaaa
gaagttaaaggtgatttaacaaagtacaaattacaaaaattcattcgttcaaaccaaggt
acttcatataaccaacgtccaatcgtaaaaattggcgatcgtgtgaaacctcgtgatatt
ttagctgatggtccttcaatggaaaaaggcgaattagcacttggtcaaaacgtacttatc
gcattcatgacatgggatggctttaactacgaagatgcggttattatgagtgaacgcctt
gtaaaggatgatgtatatacatctgttcatattgaagaatatgaatcagaagcacgtgat
acaaaactaggacctgaagaaatcacacgtgatattccaaacgtaggggaagatgcactt
cgtaatttagacgatcgtggtatcattcgcatcggtgcagaagttcgcgacggtgatatt
ttagtaggtaaagtgacgcctaaaggagttacagagttaactgcggaagagcgtttatta
catgctatctttggtgaaaaagcacgcgaagtacgtgacacgtctttacgagtaccacac
ggagcgggcggtattatcctagatgttaaagtatttaatcgtgaagatggtgacgaatta
ccaccaggagttaaccaattagtacgtgcttatattgttcaaaaacgtaaaatccgcgtt
ggggacaaaatggccggacgacatggtaacaaaggggttatctcacgtatcttaccagaa
gaagatatgccgtttatgccagatggcacaccggtagacatcatgcttaacccacttggc
gtaccatctcgtatgaatatcggacaagttttagagcttcacttaggtatggcagcacgt
tatttaggcgtacacatggctacacctgtatttgacggcgctaacgaagatgatgtttgg
gaaacgatggaagaagctggtatggatcgtgatggtaaaacaacactttatgatggacgt
tcaggtgagccattcgacagtcgtgtatcagttggtatcatgtatatgatcaaacttgcc
cacatggttgacgataaacttcatgcacgttcaacgggaccttactcattagtaacgcaa
caaccgcttggtggtaaagcacaatttggtggtcagcgattcggtgagatggaggtttgg
gcacttgaagcatatggtgctgcttacacattacaagagattttaactgtaaaatcagat
gatgttgtaggtcgtgtgaaaacatacgaagccattgttaaaggtgaaagtgttccagaa
ccaggtgttcctgaatcatttaaagtattaattaaagaacttcaatcactaggtatggat
gtgaagatgctaacaatcaacgacgaggaagtagaacttcgcgaccttgacgatgaagaa
gaagtaactgcaccagttcctgaaatggaaaatccaaaacctgctgatgataaagaagac
ccagtagagtcaattgaataa
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