Solenopsis invicta (red fire ant): 105192948
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Entry
105192948 CDS
T03916
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
soc
Solenopsis invicta (red fire ant)
Pathway
soc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105192948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
soc03041
]
105192948
Enzymes [BR:
soc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105192948
Spliceosome [BR:
soc03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
105192948
Complex B
105192948
Complex C
U2 SnRNP specific factors
105192948
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
MscL
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
105192948
NCBI-ProteinID:
XP_011155541
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All DBs
Position
9:complement(5469666..5501739)
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AA seq
768 aa
AA seq
DB search
MSYHRGSGNKPKGFGFTGFQMSGAKRSGTNIPPPPQNSTLSKQGYHTMHAITENALSASW
GMPKKRSKTEEEYFEDDDEPPTSSLEYIPAPGSPTYDLMKKSATKDDSDSEEDTLDAFMA
GIDAEVKRNNCAAQRGDNHKEDKSKGIRADIDGEDDEESYYRYMEENPTAGLQQEESDQE
IEYDEDGNPIAPPKKKEIDPLPPIDHSEIEYEPFEKNFYNVHEEIASLSKQQIDDLKKTL
GIKVSGPSPPNPVTSFGHFGFDDALIKTIRKNEYTQPTPIQAQAVPAALSGRDIIGIAKT
GSGKTAAFIWPMLVHIMDQRELKAGDGPIGLILAPTRELSQQIYQEAKKFGKVYNIQVCC
CYGGGSKWEQSKALESGAEIVVATPGRMIDLVKMKATNLTRVTFLVLDEADRMFDMGFEP
QVRSICNHVRPDRQTLLFSATFKKKVEKLARDILTDPIRIVQGDVGEANTDVTQHVIMFH
NNPSGKWNWLLQNLVEFLSAGSLLIFVTKKLNAEELANNLKLKEFDVLLLHGDMDQLERN
KVITAFKKKDVSTLVATDVAARGLDIPHIKTVVNYDVARDIDTHTHRIGRTGRAGEKGTA
FTLVTEKDKEFAGHLVRNLEGANQEVPKSLMDLAMQSAWFRKSRFKGGKGKSLNIGGAGL
GFRGRPNVSNSGGSTSQASKDISEVVKKLERHGPGSDRLSAMKAAFRSQYNSQFRASSDH
TWEQTITPPSVIMPPPIVPPPKPAVVQEIQASNSSGSERKRVRKSRWE
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgagctatcatcgaggaagtggtaacaaaccaaaaggcttcggctttactggcttccaa
atgtctggagcaaagagaagtggcaccaacatacctccacctcctcaaaattccacttta
agcaagcaaggttatcacacgatgcatgccattaccgaaaacgccttatctgctagctgg
ggtatgcctaagaagcgtagcaagaccgaagaagaatattttgaggatgatgacgaacct
ccaacttcttcattggaatatattcctgcgcctggttctcccacatacgacttgatgaag
aaatcagcgacaaaggatgacagcgacagtgaagaggatactttggatgcttttatggca
ggtatcgacgcagaagtgaagcggaacaattgcgcagctcaacgcggtgataatcataag
gaagacaaatccaaaggaattcgagcagacattgacggggaagatgacgaagaaagttat
tataggtatatggaagaaaatccaactgctggtttgcaacaagaagagtctgatcaagaa
attgaatacgatgaagacggcaatcctattgcaccaccgaaaaagaaggagatcgatcca
ctacctccgatcgatcatagcgaaatagaatatgaaccatttgaaaaaaacttttacaat
gtacacgaggagattgcaagtttaagtaaacagcagattgacgatttaaaaaagactttg
ggtataaaggtatctggaccgtccccgccgaatccagtcacaagttttggccatttcggc
tttgatgatgcgctcattaaaactatccgtaagaacgaatacacacagcccacacctatt
caggcacaggcagtccccgctgccttgagcgggcgagatataataggtatagcgaaaact
ggtagtggtaaaacggcagcatttatctggccgatgttagtacacattatggatcagcgt
gaattgaaagctggagatggcccaattggtctcattttggctccaacgagagaattgtct
caacagatttatcaagaagcaaagaaatttggaaaggtttataatattcaagtttgttgc
tgctatggaggtggcagcaagtgggaacaaagcaaagcattggaaagtggcgcggagatt
gtagttgctactcctggtagaatgatcgatttagttaagatgaaagcaacgaatttaact
agagttacatttctagttctggacgaagccgacagaatgtttgatatgggatttgaaccg
caagtacgatctatatgtaatcacgtgagacctgacagacaaacattgctatttagcgcg
acattcaaaaaaaaagtagagaagctcgctagagacattttaacagatcccattaggata
gtgcaaggagatgttggtgaagctaacaccgatgtgacgcaacatgtgattatgttccat
aataatcctagtggtaaatggaattggctattgcagaacttggttgaatttctaagcgct
ggcagtcttttgatctttgtcactaagaagctgaacgcggaagaacttgccaacaatctc
aaactgaaagagtttgatgtattacttttacatggtgatatggatcagcttgagagaaat
aaagtgattaccgcttttaagaagaaggatgtcagtactttagtcgctactgacgtagcc
gcgcgaggcttggacattccacatatcaagactgtcgtgaattacgacgtagcacgagat
atcgatacgcatacacatagaataggaaggacaggacgagccggtgaaaaaggcacggca
tttacccttgtgacggaaaaagacaaggagtttgctggacatttagtgagaaatttggag
ggagcgaatcaagaagttccaaagagtttaatggatttggctatgcaaagcgcgtggttt
aggaaatcgagattcaaaggtggaaaaggaaaaagtttaaatatcggtggcgcaggactt
ggttttagaggcagacctaatgtatccaattcgggtggatcaacgtcacaagcatccaag
gatattagtgaggtagttaaaaagttggaaagacacggacctggtagtgacagactttcc
gctatgaaggccgctttccgaagtcaatataattcccagtttcgagcatcgtcggatcac
acctgggaacaaacaattactccaccttccgtgataatgccgccaccaatcgtacctcca
ccgaagcctgcagtggttcaagaaattcaagcttccaattcctcgggatcggaacgtaaa
agagtgcgaaaaagtcgatgggagtga
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