Solenopsis invicta (red fire ant): 105193362
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Entry
105193362 CDS
T03916
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
soc
Solenopsis invicta (red fire ant)
Pathway
soc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105193362
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soc03019
]
105193362
Messenger RNA biogenesis [BR:
soc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105193362
mRNA degradation factors
5'-3' decay
Decapping complex
105193362
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
PLATZ
PDV_N
Motif
Other DBs
NCBI-GeneID:
105193362
NCBI-ProteinID:
XP_025994649
LinkDB
All DBs
Position
7:complement(13340095..13346429)
Genome browser
AA seq
721 aa
AA seq
DB search
MADTFFGFDTTLGENNLEDGLDCPLEEELEEEEYDALNDETFGPDATIGDWEEDHEKLAE
ITESNRLHNQSATSKKTISNINIEDNLSHLVLDKEGIVPRPGVWGSPLNLSPPKAQPRLS
LPNACTVEELERGLIANRPPPGLSKPQTQQQKKSEGSLLFEALSLNEKLHVNGLPPPRFP
PGFAPGAHSIILPSPIRPPPPHPPQLIQHPRLIGLINQGNVLRYPPPPHLMLPQAVPRQP
LHGSYGFPPQLHPNLGGPPFLRPDHMMPAFPNNQTNHQQHQHSYSHLGNQRNQNRSYYHN
EQQSGHQPFFKNNQYPHRNHDRNNQRPYHQHYSHSVNGNASGEYEHSGKLAIKPHEKQWL
INIQLLQLNTIQPYVDDHYYVVFCDKRNKQHADQEQKDKKHHNNNGYHKDHRDWEPTPQT
ASRSAYTPAQFENSLGKLHCSSVTAPRKLIDMDVVSNSDSQSTPQSQQKDTKKTRQLLLE
IERLFTLLFKLEDLDNPLASIPEPQQQQEGESETNIAKTEPELINMILTCLQQLIQDDKL
ASMLSIRKGKTLLLRFLPHLNVTEYSKQLRELWTAIFKGLAMIGRRDCHILTDFYAEFRR
WLDGVKDFDTILRLARALSDSANVHPVKNNSLTFALLNKFGVSAIAAMIERAEQLCDTDD
SLPFEWSTFVMTIVELIGDAPPCVAPCQPITTNTLNKHLNRIKLERYTALACLLTDANPL
R
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggcagacacttttttcggtttcgataccacgctcggagagaacaatctagaagatgga
ttggattgtccattggaagaagagcttgaagaggaagagtacgatgctttgaatgatgag
acgtttggtcccgacgctaccatcggtgattgggaagaggatcatgaaaaacttgctgaa
attactgaatcaaatcgccttcataatcagagtgcaacaagtaaaaagactatttctaac
ataaatatcgaagacaatttatcacatttggtattggataaggaaggaatagttccccga
ccaggtgtgtggggtagtcctttgaatttatctcctccgaaagctcagccacgattatct
ttaccaaatgcctgtacagtggaagagttggaaagaggacttattgcgaacaggccacca
ccaggtcttagcaaaccacaaacgcaacaacagaaaaaatcggagggttcccttctcttt
gaggccctctctttgaatgagaaacttcacgtcaatggcctacctccaccgcgttttcca
ccagggtttgctcctggagcacattctataattttacccagtcctataagaccaccacca
ccacatcctccacagttgatacaacatccaagattaataggtttaattaatcaaggaaat
gtgttacgttatcctccaccaccgcatttaatgttgccacaagctgttccaagacaacct
cttcatggctcctatggtttccctcctcaactacaccctaatttaggaggcccaccattc
cttcggccagatcacatgatgcctgcatttcctaacaaccaaaccaatcatcagcaacac
caacattcttattcacatttaggaaatcagagaaatcagaacagatcttactatcataac
gaacaacaatctggacatcaaccattttttaaaaataatcaatatcctcatcgtaatcat
gacagaaacaatcaaagaccctatcatcaacattattctcacagcgttaacggtaatgct
tcgggagaatacgaacactcaggaaaacttgctataaaacctcatgagaagcaatggtta
attaatattcaattgttacaacttaatacgattcaaccgtatgttgatgaccattattat
gtcgtgttctgtgataaacggaataaacaacatgcagatcaagaacaaaaagataagaaa
caccataataataatggatatcacaaagatcatagagattgggaaccaacacctcaaacc
gcttcaagatcagcatatacgccagctcaatttgagaattcattaggcaaacttcattgc
agcagtgtaacagcaccacgtaaacttatcgatatggatgtcgtatcaaatagcgattct
caatctactcctcagtcccaacagaaggacactaaaaaaacacgacaattactccttgaa
attgaaagactgtttacgttgctattcaaactggaagatttggataatcctcttgcttca
attccggaaccgcaacagcaacaagaaggcgaatccgaaacaaacattgctaaaactgaa
ccggaattaataaacatgattttaacatgtttacaacaattaatacaagatgataaatta
gctagcatgctaagtattcgaaaaggaaagacattactactgcgttttttacctcatctg
aacgtgacagaatatagtaagcagttaagagaattgtggactgcgatatttaaagggtta
gccatgataggccgtagagattgtcatatattgacagatttttatgctgaatttcgaagg
tggcttgacggtgtaaaagattttgataccatattgcgattagcaagagcattatccgac
tcggctaacgttcaccctgttaaaaacaatagtttaacttttgctcttctgaataagttt
ggtgtgtctgcaatagcggcgatgatagaacgagctgaacaattgtgcgatacagacgat
tccctgccttttgaatggtcaacttttgtaatgacaatagttgaactaattggtgatgca
ccaccatgtgttgcaccttgtcaaccaattactacaaatacgctcaataaacatctgaat
cggataaagctagaaaggtacacagcgctagcgtgcttgttgactgatgccaatccttta
cgatag
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