Solenopsis invicta (red fire ant): 105193533
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Entry
105193533 CDS
T03916
Name
(RefSeq) nucleoporin NSP1
KO
K18716
nucleoporin NUP42
Organism
soc
Solenopsis invicta (red fire ant)
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soc03019
]
105193533
Messenger RNA biogenesis [BR:
soc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
105193533
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GFIT
Motif
Pfam:
zf-CCCH_4
zf_CCCH_4
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
105193533
NCBI-ProteinID:
XP_011156311
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Position
7:919117..922461
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AA seq
631 aa
AA seq
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MVICKYYRQGNCRYGQYCQFEHINHFGNTKGEDDIIILVAKEVLLAERGGQWLLSCFAPL
KERCCIPGMKDVSPEEVRWEIYEAQKNGMVEQAKLHFQQLCQEMKAKREMLKNPTRETIT
FLKKNLGSKCPGTQQFASPGNVFASAFGVQNNNPFAGNGFVSSSNASIFGKSNNNTTSVF
GGGATFGNNLGGFNGAATSGAGSMFGTTSTSTSFSGVQNSAPAFGTPQSNSIFGGSSQNM
FGQNNNVFGGTSQLSNASTTSLFNNSITSQANTSLFGGATTASNLFGGSSTGLQTNSVFG
GVSTTSSSGSFNNGMFTQPKTQIPAFGGAPVFGGVTPNYNSNSTGNTIFGGGGQTFGAPA
ISSSGSIFGGSTAAATPAFGAVVSTTTPTFGTSVVASTAPGFAATTAPTFDLAQQPSNNT
TFGVTASTPNVFATQNTNTMLMGNTPFGAPPVAMNGPFVTANSQQFDSTSTSSAPFSGTG
FGVPVANTSNTFGTTETSSSNSIFANAATTFATTNGTVSNQSLFSASTFGNVNPVSSPFG
SGAATTFTATTTLTSPFAPRTQQGSSPFGNVQNQPNINASPFRKSSCNEIVIDDSVYSAE
GTLTDEEKNQFLADSFILGKIPLKPPTKALS
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggtcatctgcaaatattatcgacaaggcaattgtcgttacgggcagtactgccaattc
gagcatataaatcatttcggcaataccaaaggagaggatgatatcattatcttggtggct
aaagaagtacttcttgctgagagaggtggacaatggttattatcatgttttgcaccactt
aaagaacgctgctgtatcccaggtatgaaggacgtatccccagaagaggttcgatgggag
atatatgaggcacaaaaaaatggcatggttgaacaggcgaaactacactttcaacaattg
tgtcaagaaatgaaggcaaaaagggagatgctgaaaaatcccacacgagagacaattacg
ttcctgaaaaaaaatttaggaagtaaatgtcctggaactcaacagtttgcctcacctggt
aacgtattcgcaagcgcattcggcgtacaaaataataacccatttgccggaaatggattc
gtctcctcgagtaacgcatcgatattcggaaaatccaataataatacaacgtctgtattt
ggcggtggggcaacctttggaaacaatctcggcggatttaatggtgccgcgacaagtgga
gctggttccatgttcggaacaacaagcacgtcgacgtcgttcagcggagtacagaacagc
gcgccagcgtttggaacacctcagagcaattcaatcttcggcggatcgtctcaaaatatg
ttcggtcaaaataacaacgtatttggcggaacgagccagctcagcaacgcgtccactact
tcgttgttcaacaattcgataacttcgcaggcaaacacttcgttatttggcggagcgacg
accgcctccaacttgttcggcggttcatccaccggattacagacaaattcggtcttcggc
ggtgtctcgaccacgtcgtcgtccggttcctttaacaatggcatgtttactcaaccaaaa
acacagattcctgcgttcggtggagcgccagttttcggaggagtaactcctaactataac
agcaattctactggcaacacgatattcggaggcggcggacaaacgttcggtgctcccgcg
atatcatcgagcggtagtatcttcggcggatccacggccgccgcaacaccggcttttgga
gcggtcgtctctaccacaacgccaacttttggtacgtccgttgttgccagcacggcgcca
ggttttgctgctaccacggcgccgacttttgatctagctcaacagcccagcaataatacc
actttcggggtgactgcatcgactccgaatgttttcgctacacaaaataccaacacgatg
ttaatgggcaacacgccattcggcgcgccgcctgttgcgatgaacggtccgtttgtcacc
gctaactcacagcagtttgattctacgagtacaagctcagcgccgttttccggcacagga
tttggagtgcccgtcgctaatacgagtaacacgttcggtaccacagaaacgtcttcttcc
aattcgatatttgcgaacgcggcaactacctttgcaaccaccaatggaactgtttcaaat
cagtcactgttctccgcatctactttcggcaacgtcaacccagtttcctctccgttcgga
tcaggtgctgctacaacttttacggcaacgacaacccttacaagcccatttgcaccacga
acacaacaaggcagttcaccattcggaaatgtgcaaaatcaacctaacatcaacgcttct
ccttttagaaaatcatcttgtaacgaaatcgtcatcgatgatagcgtttatagcgcggag
ggtacgttaacggatgaagaaaagaatcaattcttggctgacagttttattcttggcaaa
ataccactcaaacctcccaccaaagctttgagttga
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