Solenopsis invicta (red fire ant): 105193840
Help
Entry
105193840 CDS
T03916
Name
(RefSeq) pre-piRNA 3'-exonuclease trimmer isoform X2
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
soc
Solenopsis invicta (red fire ant)
Pathway
soc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105193840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soc03019
]
105193840
Enzymes [BR:
soc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
105193840
Messenger RNA biogenesis [BR:
soc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105193840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
W2
Motif
Other DBs
NCBI-GeneID:
105193840
NCBI-ProteinID:
XP_011156770
LinkDB
All DBs
Position
2:19425679..19432866
Genome browser
AA seq
540 aa
AA seq
DB search
MIEVTNENFNQVYPHLEQTLKNANFIAIDGEFTGIDGDDVKNSLFDSVHERYENNRINIQ
PHIIIQFGISAFQRIQNENKYTAEVFNFYLLPRSIPSKARQFLWSIPALEFLTVYGFDFN
KLAYQGISYLDEVDEEFLQQQIQKNTLLDNVEQSISYKEEEDFKDTATQILEWLKTASDE
TDSFKIESCTPTMQYFMQKTLRKRFSNIWTFSGNNMITVIKVPPESRRMLEQEEGSILEN
VLLESYIGFSKVFKLLVTLKKPIIAHNPLLDFMFMHQQFYKPLPRTYINFKNNIHQLFPI
IYDTKFLSFELREILQTEEKWKSNVLSELVTHFTTNQGKRIPLGSPVVELANSNKLDDIA
VSKKYHTAGWDAYFSGYIFIRLAHLFVSKRYEQSISSKHFTHTELMNGVKGFANCLNIIR
GNTSHLRLDAPEPISTRPKWLYVKTLASQSITASQIAEKMSRFGAVDVKQYTSKRALVAV
ANHRSARDILQHFKQNKELYVVPYNPIRHSPSVQLILWSSIVVSGGVFAWVLHQKFQRSS
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgattgaagtcacgaatgagaattttaaccaggtgtatccgcacctggagcagacgtta
aaaaatgcaaattttattgcgatcgatggagaattcacaggaatagacggcgatgatgta
aaaaatagtttattcgactccgtacacgaacgctacgagaacaacagaatcaacattcag
ccacacataataattcaattcggtatttcggcgtttcaacgaattcagaatgagaacaag
tatactgcggaggttttcaatttctatttgctgcctagatctattccatcgaaggccaga
caatttctttggagcataccggcgttagagttcctgaccgtatatggctttgattttaac
aaacttgcttatcaaggtatttcgtaccttgatgaagttgacgaagaattcttacagcaa
caaatacaaaagaatacgttgctcgacaatgtggagcaatctatatcttacaaagaggaa
gaggattttaaagatacagccactcaaatattggaatggttgaagacagctagtgatgaa
acagattcatttaaaattgaatcctgtactccaactatgcagtattttatgcaaaaaaca
ttaagaaaacgtttctcaaatatttggactttctcagggaataacatgataactgtgatt
aaagtgccaccagagtcgagaagaatgttggaacaagaagaaggctctatattagaaaac
gtgttgctcgagtcatatattggattttcaaaagtattcaagctcttagttactctgaaa
aaacctataattgcacataatcctcttttagattttatgttcatgcatcaacagttttat
aaaccattaccacgaacgtatattaatttcaagaataacatacatcaactatttccaata
atttacgacacaaaatttttgagctttgaattgagagaaattcttcaaacagaagaaaaa
tggaaaagtaatgtattaagtgagttagttactcattttacaactaatcagggaaaacgt
ataccattaggctctcctgttgttgaactcgcaaattcaaataaattagatgatattgct
gtttctaagaaatatcataccgcaggatgggatgcttatttttccggttacatatttatt
agactagctcatctatttgtttcaaaacgttatgaacaaagtataagttcaaagcacttt
actcatacagaattaatgaatggcgtaaaaggctttgcaaactgtttaaatatcatacgc
ggtaatacatcacatttgagacttgatgcacctgaacctatatcgactcgaccaaagtgg
ctttatgtaaaaacgttagcatcgcaatcgattacagcctcacagatagctgaaaaaatg
tcgaggtttggcgccgttgacgtgaaacaatacacatcgaagcgtgctttagttgcagta
gcaaatcacagaagcgcacgagacatattgcaacacttcaagcaaaacaaggagctatac
gtagtcccatacaatccgatacggcattcgccttcagttcaacttattctttggagcagt
atagtcgtttctggcggagtctttgcgtgggtgctgcatcagaagtttcagagaagttct
taa
DBGET
integrated database retrieval system
