Solenopsis invicta (red fire ant): 105193878
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Entry
105193878 CDS
T03916
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
soc
Solenopsis invicta (red fire ant)
Pathway
soc04136
Autophagy - other
soc04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
105193878
04136 Autophagy - other
105193878
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
soc04131
]
105193878
03029 Mitochondrial biogenesis [BR:
soc03029
]
105193878
Membrane trafficking [BR:
soc04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
105193878
Others
Specific organelles associated proteins
Auto phagosome
105193878
Mitochondrial biogenesis [BR:
soc03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
105193878
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
ATG16
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_WDR19_1st
eIF2A
Beta-prop_EIPR1
Beta-prop_WDR75_1st
Beta-prop_WDR35_TULP_N
Beta-prop_IFT122_1st
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_SCAP
WD40_RFWD3
RMC1_N
PEP5_VPS11_N
Cytochrom_D1
Beta-prop_Vps41
DUF4407
Ge1_WD40
Cluap1
Beta-prop_RIG_1st
UCH
Fez1
Motif
Other DBs
NCBI-GeneID:
105193878
NCBI-ProteinID:
XP_011156839
LinkDB
All DBs
Position
6:complement(2463433..2907198)
Genome browser
AA seq
568 aa
AA seq
DB search
MISNEAGVSLGVTREDVNWRKDLISQLRERNRSQTNCFADLISLHNRLFENTNTLRNTNM
QLTIANETLRREAANGSIGMGGNPDLEARLLKQAEELAMLHKRKGEHTQQIVDLNNKLQE
MTKEFQAKETSLAESLEANTNLRLEITKCFGREKELEGINQMLKDEHQALQLAFASLEEK
LRKTQEENRQLIERLIKYKARDAEKMNEENDNFLSFTSPTAFLMHTLSKFGKRQAKMQKE
LEDAARDTRPVSPDRLSLKEVAGLPTAVPTKVSVTFSAHEGEVCAVKWSPTDRILATGGA
DRKVKLWNITKGTSESKGILVGSNAGVMSVDFDSTGTLILGASNDYASRVWTVNDLRLKH
TLTGHCAKVMAAKFLGEPSKVVTGSYDRTLKIWDLRSKACIETKFAGSSCNDLVTSDGAG
STIISGHFDQRIRFWDTRAESSSNDILLEGKVTSLDLSRDANYLLSCVRDDTVKLIDLRM
KKIVGSFSADGFKVGFDWTRAAFSPDGQYIAVGSADGSVFIWSIATNMIETILKGHMAAV
TAVSWHPHGTYLASVDRAKTVIIWGDQV
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgatttcgaacgaagcaggcgtttcgctcggcgttacccgggaagacgtcaactggcgg
aaagatttaatctcacagctacgtgaaagaaacagatcacaaaccaattgtttcgcagat
ctcatcagcctacacaataggttatttgaaaatacaaacacattgcgaaatacaaatatg
caattgacaattgcaaatgagactctccgtcgggaagcagccaatggcagcattggcatg
ggtggaaatcctgatcttgaagctagactcttaaagcaagcggaagaattggcgatgctg
cataagaggaaaggagaacatacacaacaaatagtagatctcaataataaattgcaggaa
atgacaaaagaatttcaagcaaaggaaactagccttgcagaaagtttagaagccaatact
aacttacgtttagaaataactaaatgctttggtagagagaaagagttagaaggtattaat
cagatgctcaaggatgaacaccaagccttgcaacttgcttttgcatctttagaagaaaag
cttaggaaaacacaggaagaaaatcgacagctgattgaacgtttgataaaatataaagcc
agagatgcagaaaagatgaatgaagaaaatgataactttttaagttttacgagcccaaca
gcctttttgatgcataccttatcaaaatttgggaaaagacaagcaaagatgcaaaaggaa
ttggaagatgcagctcgagatacgcgacctgttagtcccgatcgtttaagcttaaaagaa
gtcgctggtcttccgacagcagtgccaaccaaagtatccgtaacatttagtgcccatgag
ggggaagtatgcgctgttaaatggtcgcctactgatagaatattggctactggaggtgct
gataggaaggtgaagctttggaacattactaaaggtacatcggaaagtaagggcatcctc
gttggcagcaacgccggtgtgatgtcggtggacttcgattcgacgggcacccttattctt
ggagcgtccaacgattatgcgagccgcgtctggactgtcaacgatcttcgcctaaagcat
acactcacgggccactgcgcaaaggtgatggcggcgaagtttcttggcgagccgtcgaaa
gtagttacgggaagttatgatcggactttaaaaatctgggatctgcgcagcaaagcatgt
atagaaacgaaatttgctggttctagttgcaatgatcttgtaacttccgatggagcggga
tctacgataattagtggtcattttgatcaaaggatcaggttttgggacactagagccgaa
tccagttcaaatgacattctcttagaaggaaaagttacatctttagatttatcccgagac
gcaaattaccttttgagttgcgtcagggatgacacggtgaaactgattgatttacgaatg
aagaagattgtcggatcgttcagcgctgacggtttcaaagtgggattcgattggacaaga
gctgctttcagtcctgatggacagtacattgcggttggttccgcggacggttccgttttc
atctggtctatagcgacgaatatgatcgaaacaatactaaaagggcacatggcagcagta
acggccgtgtcttggcatccgcacggcacgtatttagcgtctgtcgatcgtgccaagacg
gtgataatttggggcgaccaggtttga
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