Solenopsis invicta (red fire ant): 105194067
Help
Entry
105194067 CDS
T03916
Name
(RefSeq) high mobility group protein DSP1 isoform X1
KO
K10802
high mobility group protein B1
Organism
soc
Solenopsis invicta (red fire ant)
Pathway
soc03410
Base excision repair
soc04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
105194067
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
105194067
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
soc03036
]
105194067
03400 DNA repair and recombination proteins [BR:
soc03400
]
105194067
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
soc04147
]
105194067
Chromosome and associated proteins [BR:
soc03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
105194067
DNA repair and recombination proteins [BR:
soc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
105194067
MMR (mismatch excision repair)
Other MMR factors
105194067
Exosome [BR:
soc04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
105194067
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
HMG_box_5
Motif
Other DBs
NCBI-GeneID:
105194067
NCBI-ProteinID:
XP_011157096
LinkDB
All DBs
Position
14:12452103..12466972
Genome browser
AA seq
484 aa
AA seq
DB search
MSEHHRVAGGWGTASPGNREDASGGAAWWPSGLNADQQQQQQQQQQQQQQNLHQHLMNQQ
QQQQQQQQQQQQQQQLAQQQQQQQQPQHHQDNVRSTAAAVNQQLFSYKMASSFQNPATTG
AISSPVSTSTPVGGGAACMRGGYDYRLGAAPGPGQGAAGGGGGGGGGAGAGAGGGAAAGV
PGTPSAPPPGVQWWYPGGVMDAAAAQNNLHQQLQGQQQQQQPQQQHLSPITTQTSTPPVM
SPISHPHVGQLDFRLFLQHPIQQIPQNNLQQNNAQSLQRDNMPRGKDSKPRGRMTAYAFF
VQTCRQEHKKKHPEEKIVFREFSKKCAMRWKTMSDIEKKRFHEMAEKDKKRYDTEMQNYT
PPKGENKGRGKKRKHIKDHNAPKRSLSAFFWFCNDERGKVKMLNPEYGVGDIAKELGKKW
SDADPETKSKYEAMAEKDKARYEREMTAYKKKMQNDGAPMVGGAQANQTIIKSDSEEEWK
EDDE
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagcaccaccgcgtggccggtggctggggcaccgcgagcccgggtaaccgagag
gatgccagcggcggtgccgcctggtggccctcgggcctgaacgccgatcagcagcaacag
cagcagcagcagcaacaacagcaacaacaaaatctacatcaacatttgatgaatcagcag
caacagcagcagcagcagcagcagcaacagcagcagcagcaacagctcgcgcaacaacag
cagcagcaacagcaaccgcaacatcatcaggacaacgtccgaagtactgccgccgcggtg
aaccaacagctcttctcctacaaaatggcctccagcttccagaacccggccaccaccggc
gcgatatcgagtccggtctcgacatccacgccggtcggcggcggcgccgcgtgcatgagg
ggtggatacgattacaggctcggtgcggcgccgggtcctggacaaggcgccgccggtggc
ggtggtggcggcggtggcggtgcgggtgcgggtgccggtggcggcgccgccgccggcgta
cccggcacaccttccgcaccgccacccggcgtacagtggtggtatccaggcggagtcatg
gacgccgctgccgcgcagaacaacctgcaccagcagttgcagggccagcagcaacaacag
cagccacagcagcaacacctctcgcccattaccacgcaaacgtccacgccccccgttatg
tccccgatctcacatccgcacgtaggtcaactagatttccgattatttctgcagcacccg
atacagcagataccgcaaaataatcttcaacaaaataacgctcagagtctgcagcgggac
aatatgccgagaggaaaagattcgaagccaagaggacggatgacagcgtatgcgttcttc
gtccagacatgtcgccaggagcataaaaagaagcatcccgaggaaaagatcgtcttccgg
gaattctccaaaaagtgtgcaatgaggtggaagaccatgtcggacatcgagaagaagcgt
ttccacgaaatggcagagaaagataagaagagatatgacacggagatgcagaactatacg
ccgcctaagggagaaaataagggcaggggcaagaaacgcaaacacatcaaggatcataat
gctcccaagagatcgctgtctgctttcttctggttctgcaatgacgagcgcggtaaggtc
aaaatgctgaatcctgaatatggcgtaggtgatatagctaaggaattaggcaagaaatgg
tcggacgcagatcccgaaaccaaatccaaatacgaggctatggcagagaaggacaaggct
cgatacgaaagggaaatgactgcgtacaaaaagaaaatgcaaaatgatggtgccccaatg
gtgggaggagcgcaggcgaaccaaactataataaaaagcgacagcgaagaggaatggaag
gaagacgacgaatag
DBGET
integrated database retrieval system
