Solenopsis invicta (red fire ant): 105194647
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Entry
105194647 CDS
T03916
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
soc
Solenopsis invicta (red fire ant)
Pathway
soc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105194647
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
soc03041
]
105194647
03009 Ribosome biogenesis [BR:
soc03009
]
105194647
Enzymes [BR:
soc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105194647
Spliceosome [BR:
soc03041
]
Complex A
U2 snRNP components
U2 related factors
105194647
Complex B
105194647
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
105194647
Ribosome biogenesis [BR:
soc03009
]
Eukaryotic type
90S particles
Helicases
105194647
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
SRP54
ResIII
T2SSE
Flavi_DEAD
AAA_7
ABC_tran
AAA_30
AAA_25
AAA_16
TsaE
ATPase
Motif
Other DBs
NCBI-GeneID:
105194647
NCBI-ProteinID:
XP_011157974
LinkDB
All DBs
Position
11:complement(3380923..3386891)
Genome browser
AA seq
719 aa
AA seq
DB search
MSKRRIEVVDPYVKRKATDSSVSNNATTPGTTAAKSQVQFNPYTMLPYTPRYYELYKKRI
TLPVFEYRTDFMRLLSQHQCIVLVGETGSGKTTQIPQWCVEYSRSIGNKGVACTQPRRVA
AMSVAQRVSEEMDVALGQEVGYSIRFEDCSSPRTVLKYMTDGMLLREGMSDPMLDAYQVI
LLDEAHERTLATDLLMGVLKEVIKQRPDLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTH
PVEIFYTPEPERDYLEAAIRTVIQIQMCEEIAGDLLLFLTGQEEIEEACKRIKREMDNLG
PEVGELKCIPLYSTLPPNLQQRIFEPAPPTKANGAIGRKVVVSTNIAETSLTIDGVVFVI
DPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEKAYKNEMQDN
TYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDDGNLTD
LGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNESKKAADDAKMKF
AHIDGDHLTLLNVYHSFKQHMDDVQWCYDNYVNYRSLKSGDNVRQQLSRIMDRFVLKRTS
TDFNSKDYYINIRKALVNGFFMQVAHLERTGHYLTIKDNQVVQLHPSSCLDHKPEWVIYN
EFVLTTKNYIRTVTDIKPDWLLMIAPQYYDLQNFPQCEAKRQLELTQAKLDSKQYQEGF
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcgtaggatcgaggtcgtagatccctatgtcaaacggaaagccacggacagt
tctgtttccaacaatgcaacaactccagggacgacggcggcgaagagccaagtacaattc
aatccatatactatgctgccatacacgccgagatactatgaactttacaagaaaaggata
actctgcctgtattcgagtatcggactgattttatgagattgttatctcagcatcaatgc
attgttctcgttggagaaacaggttctggtaagactacacagataccgcaatggtgtgtg
gagtattcgagaagtattggaaacaaaggagttgcctgtacacaacctagaagagtggca
gctatgagcgttgctcaaagagtttcagaagagatggatgttgccttaggtcaagaagta
ggatatagcatccgttttgaagattgtagttctccgaggactgtgttgaagtacatgacc
gacggtatgttgcttcgagaaggcatgtccgatcctatgttggatgcctatcaagtgata
ctgctagatgaagctcatgaaagaacgttagctactgatttgctgatgggtgttttgaaa
gaagtgatcaaacaaagaccggacttgaaacttgtgattatgagtgctaccttggacgcg
ggaaaatttcagcagtactttgataacgcaccgctcatgaacgtacctggtagaacgcat
ccagtcgagatattttacacgccggagccagaaagagattacttggaagcggcaattaga
actgttattcagatacagatgtgtgaagagattgctggggaccttttgctatttctaact
ggccaagaagaaatcgaagaagcttgtaagagaattaaaagagaaatggacaacttggga
cctgaagtcggtgaattgaagtgcataccgttgtattcgacactgccaccgaatcttcaa
cagagaatattcgagcctgctccgcctaccaaagctaatggtgctatcggtcgcaaagtc
gtcgtctcgactaatattgcggaaacatcgttgactattgacggggtcgtctttgtcata
gatcctggttttgccaagcaaaaagtatataatcctaggattcgtgttgaatccctctta
gtatcacctattagcaaagcttcggcacagcagagagccggtcgtgctggcagaacaaga
cctggaaagtgtttcagattatatacagaaaaggcatacaagaatgaaatgcaagataat
acctatcctgagattttgcgttctaatctcggaagcgtcgtattgcaattgaagaaactc
ggcattgacgatctggtacattttgactttatggatccacctgcgcctgaaactcttatg
agagctttggagcttttgaattatctagcggctcttgatgatgacgggaatctgacggat
ctcggcgcggtaatggcggaatttccattagatcctcagttggcaaagatgcttatagct
tcttgtaatcataattgcagcaatgagatactcagtattaccgctatgctctcagtccca
cagtgctttgtgaggccaaatgaatcaaaaaaggctgcagatgatgcaaaaatgaaattt
gcacatattgatggtgatcatctgacactacttaacgtatatcattctttcaaacaacat
atggatgatgtccaatggtgttatgacaattacgtgaattatcgatcgttgaagagtgga
gacaatgtaaggcaacagttgagccgaataatggatcgatttgtattaaaacgtacttcg
acggactttaattcaaaagattattacattaatatcagaaaagctcttgttaatggtttt
ttcatgcaggtagcacatttagaaagaacaggacattacctgactatcaaagacaatcag
gtagtacaacttcatccgagcagttgtcttgatcacaaaccagagtgggttatctataat
gaatttgtactaacaactaaaaattatatcagaacagtcaccgatataaaacctgattgg
ttacttatgatagcgccacaatattatgatctacaaaatttccctcaatgtgaagcaaaa
agacaactcgagctcacccaagcgaaattagattcaaaacagtatcaggaaggcttctaa
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